Ss1.1-Pig1-37H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGGAGCCCCTCTCGAGAGGAAGTTTAGCAGAAAAGTTGAGCTCCCTCTGAGTAGGTC TTGAAGGAGCACCGTGCTGTTCTCAGCATGTTGGCTCTGGTGATAATGAGTAAAAGGACT GGGTGGGAGGCCCTCTCAGACCACAAGTATTCATGGGCCAGAAAGAAAGCAAATTCAGCT TGTTACTTTGGGATCTGCTCTCGGGAGCACAAAGGATTCCTTCATCTGCAGAGACCAAGT CTGGCGCTGGTGCCCAGGAAGCTATGTCCCCACTATGCCTGGGATGCCGACGTGCTGCTT CAGGCCTGGCCAGCCGTGGACCCGCAGTTCCTCCAGCAGCCTGACGTCGTGCAGATGGCA GTTCTGATCAACAACAAAGCCTGCGGCAAAATCCCCGTGCCCCAGCAAGTCGCCCAGGAC CAGGACAAAGTCTATGAACTGGTTCTCCAAAGTGAACTGGGTATCAAGAAGAGCAAGCCC AGGCAGAGGGGTGGGACTGATGCCACCCAGGCATCGCCTTCTGTGTCCAGGCCATGGCAG TCTGGCTGCCAGGGAGACAGCTGGGGCTGGACCTATGTCATGTATATTAGGGTGAACCTA TGGTTTTGTGGAGTCAGCAGTCAGGTGCTCTTACCAGAACTGGCTTAAGACCGGTTACTA TGAATGAGGGGAGGAGGAGGAGAATCTGGCCGTATTGTGATGCTGAAAATCTGTATTTGT TCTCTGATGCCTTCTTCTGAAGTAGCCTCAGATGTGGTCCCCTGCAGTTCAGCAGTTAAC AGATGACTTTTTTTTTTTTTAATGTAATAAAATGTTTGTCATGTAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGGAGCCCCTCTCGAGAGGAAGTTTAGCAGAAAAGTTGAGCTCCCTCTGAGTAGGTC TTGAAGGAGCACCGTGCTGTTCTCAGCATGTTGGCTCTGGTGATAATGAGTAAAAGGACT GGGTGGGAGGCCCTCTCAGACCACAAGTATTCATGGGCCAGAAAGAAAGCAAATTCAGCT TGTTACTTTGGGATCTGCTCTCGGGAGCACAAAGGATTCCTTCATCTGCAGAGACCAAGT CTGGCGCTGGTGCCCAGGAAGCTATGTCCCCACTATGCCTGGGATGCCGACGTGCTGCTT CAGGCCTGGCCAGCCGTGGACCCGCAGTTCCTCCAGCAGCCTGACGTCGTGCAGATGGCA GTTCTGATCAACAACAAAGCCTGCGGCAAAATCCCCGTGCCCCAGCAAGTCGCCCAGGAC CAGGACAAAGTCTATGAACTGGTTCTCCAAAGTGAACTGGGTATCAAGAAGAGCAAGCCC AGGCAGAGGGGTGGGACTGATGCCACCCAGGCATCGCCTTCTGTGTCCAGGCCATGGCAG TCTGGCTGCCAGGGAGACAGCTGGGGCTGGACCTATGTCATGTATATTAGGGTGAACCTA TGGTTTTGTGGAGTCAGCAGTCAGGTGCTCTTACCAGAACTGGCTTAAGACCGGTTACTA TGAATGAGGGGAGGAGGAGGAGAATCTGGCCGTATTGTGATGCTGAAAATCTGTATTTGT TCTCTGATGCCTTCTTCTGAAGTAGCCTCAGATGTGGTCCCCTGCAGTTCAGCAGTTAAC AGATGACTTTTTTTTTTTTTAATGTAATAAAATGTTTGTCATGTAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-119, + strand, RNAz p=0.994192 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-119, + strand, RNAz p=0.994192 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-198, gnl|bosTau2|chr22 (44150692-44150496) | |
| 2-198, gnl|canFam2|chr20 (45899531-45899239) | |
| 2-198, gnl|hg17|chr3 (45557752-45558051) | |
| 2-198, gnl|Hg17|chr3 (45557796-45557987) | |
| 2-198, gnl|loxAfr1|scaffold_20915 (30164-30448) | |
| 2-198, gnl|mm7|chr9 (123175001-123175256) | |
| 2-198, gnl|panTro1|chr2_random (37320505-37320206) | |
| 2-198, gnl|rheMac2|chr2 (90992375-90992080) | |
| 2-198, gnl|rn3|chr8 (128249151-128249402) | |
| 236-366, gnl|bosTau2|chr22 (44149885-44149755) | |
| 236-366, gnl|canFam2|chr20 (45898807-45898659) | |
| 236-366, gnl|danRer3|chrNA (172798173-172798309) | |
| 236-366, gnl|dasNov1|scaffold_38135 (3213-3358) | |
| 236-366, gnl|echTel1|scaffold_115802 (283-424) | |
| 236-366, gnl|fr1|chrUn (43752462-43752353) | |
| 236-366, gnl|galGal2|chr2 (41989639-41989491) | |
| 236-366, gnl|hg17|chr3 (45558320-45558468) | |
| 236-366, gnl|Hg17|chr3 (45558322-45558452) | |
| 236-366, gnl|loxAfr1|scaffold_20915 (30736-30884) | |
| 236-366, gnl|mm7|chr9 (123175719-123175866) | |
| 236-366, gnl|Mm7|chr9 (123175721-123175851) | |
| 236-366, gnl|monDom2|scaffold_7 (66269852-66270001) | |
| 236-366, gnl|oryCun1|scaffold_173341 (22709-22561) | |
| 236-366, gnl|panTro1|chr2_random (37319936-37319787) | |
| 236-366, gnl|rheMac2|chr2 (90991852-90991704) | |
| 236-366, gnl|rn3|chr8 (128249865-128250013) | |
| 236-366, gnl|tetNig1|chr8 (5406137-5406055) | |
| 236-366, gnl|xenTro1|scaffold_946 (348032-347892) | |
| 473-825, gnl|bosTau2|chr22 (44143341-44143004) | |
| 473-825, gnl|Hg17|chr3 (45564988-45565330) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-198, gnl|bosTau2|chr22 (44150692-44150496) | |
| 2-198, gnl|canFam2|chr20 (45899531-45899239) | |
| 2-198, gnl|hg17|chr3 (45557752-45558051) | |
| 2-198, gnl|Hg17|chr3 (45557796-45557987) | |
| 2-198, gnl|loxAfr1|scaffold_20915 (30164-30448) | |
| 2-198, gnl|mm7|chr9 (123175001-123175256) | |
| 2-198, gnl|panTro1|chr2_random (37320505-37320206) | |
| 2-198, gnl|rheMac2|chr2 (90992375-90992080) | |
| 2-198, gnl|rn3|chr8 (128249151-128249402) | |
| 236-366, gnl|bosTau2|chr22 (44149885-44149755) | |
| 236-366, gnl|canFam2|chr20 (45898807-45898659) | |
| 236-366, gnl|danRer3|chrNA (172798173-172798309) | |
| 236-366, gnl|dasNov1|scaffold_38135 (3213-3358) | |
| 236-366, gnl|echTel1|scaffold_115802 (283-424) | |
| 236-366, gnl|fr1|chrUn (43752462-43752353) | |
| 236-366, gnl|galGal2|chr2 (41989639-41989491) | |
| 236-366, gnl|hg17|chr3 (45558320-45558468) | |
| 236-366, gnl|Hg17|chr3 (45558322-45558452) | |
| 236-366, gnl|loxAfr1|scaffold_20915 (30736-30884) | |
| 236-366, gnl|mm7|chr9 (123175719-123175866) | |
| 236-366, gnl|Mm7|chr9 (123175721-123175851) | |
| 236-366, gnl|monDom2|scaffold_7 (66269852-66270001) | |
| 236-366, gnl|oryCun1|scaffold_173341 (22709-22561) | |
| 236-366, gnl|panTro1|chr2_random (37319936-37319787) | |
| 236-366, gnl|rheMac2|chr2 (90991852-90991704) | |
| 236-366, gnl|rn3|chr8 (128249865-128250013) | |
| 236-366, gnl|tetNig1|chr8 (5406137-5406055) | |
| 236-366, gnl|xenTro1|scaffold_946 (348032-347892) | |
| 473-825, gnl|bosTau2|chr22 (44143341-44143004) | |
| 473-825, gnl|Hg17|chr3 (45564988-45565330) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| mcp (0.170648) |