Ss1.1-Pig1-37L03.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AAGGAGAGGCACCACATCACACCCACAGTCCACACGATTTTGAAATCTCCGGCCTTCAAG TGCATCCACTGCTGTGGGGTTTACACTGGCAACATGACCCTGGCAGCCATTGCCATCCAT CTGCTGCGCTGCAGGAGTGCTCCCAAGGACAGCAGCTCAGACCTTAAGGTGCAGCCTAGT TTTATTGAGAACAGTGAACTGCTTTTAGTCAATGGCGAGGTGATCCATGACTCGGGATTT TCTGTAAAGAGAAAGCTGCCTGATGGCCACTTTGGGGCCGAAGACCAGAGGGATGGGGAG GAGCGACCTCTCATCATAAATGCCGACGCAGACCCAACACCAGAAAAGGTCACAAGTGTT GTGCCTTTTAAAAGACAGAGGAATGAGAGCAGGACGGAGGGACCACTTGTTAATGATGAT GCTCTTCAGATTTTAGCATTAAATCCTAAAAAATATGAAGATCGTTCTTACGAAGAAAAA AAAGCAGTTTCTTAGAGATTATTTCCACAAGAGACCGTATCCCAGTAAAAAGGAAATAGA GCTGTTGTCGTCACTCTTATGGGTGTGGAAGATTGACGTGGCTTCATTTTTTGGAAAAAG AAGATATATTTGCATGAAAGCAATAAAAAATCACAAGCCGTCTGTACTTTTAGGCTTTGA TATGTCTGAACTTAAAAATGTTAAACATAGATTGAACTTTGAATATGAACCACAAAACTT GTAAAAAAAATTAGGAAATTTAAAATACTAGATAATTAGTTTTTTCAATTGAGATTTAAA AAAATGTTATTTTCTTCACTGTACGTTGAAATAATCAATTCAGTGGTCTTTATGCTGCTC TTTAGATTTATTTCAGGTGCTCAGAAAGACTTCTATATAAAGAAGTGAATAGGTCTTTCA GATTTATTGTTTCCTGCAGTTTGATTTTGTAACAATTATTTTTCATTTTTTCTTCTGTCA TGTAAATTAAATCTTTTGATATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AAGGAGAGGCACCACATCACACCCACAGTCCACACGATTTTGAAATCTCCGGCCTTCAAG TGCATCCACTGCTGTGGGGTTTACACTGGCAACATGACCCTGGCAGCCATTGCCATCCAT CTGCTGCGCTGCAGGAGTGCTCCCAAGGACAGCAGCTCAGACCTTAAGGTGCAGCCTAGT TTTATTGAGAACAGTGAACTGCTTTTAGTCAATGGCGAGGTGATCCATGACTCGGGATTT TCTGTAAAGAGAAAGCTGCCTGATGGCCACTTTGGGGCCGAAGACCAGAGGGATGGGGAG GAGCGACCTCTCATCATAAATGCCGACGCAGACCCAACACCAGAAAAGGTCACAAGTGTT GTGCCTTTTAAAAGACAGAGGAATGAGAGCAGGACGGAGGGACCACTTGTTAATGATGAT GCTCTTCAGATTTTAGCATTAAATCCTAAAAAATATGAAGATCGTTCTTACGAAGAAAAA AAAGCAGTTTCTTAGAGATTATTTCCACAAGAGACCGTATCCCAGTAAAAAGGAAATAGA GCTGTTGTCGTCACTCTTATGGGTGTGGAAGATTGACGTGGCTTCATTTTTTGGAAAAAG AAGATATATTTGCATGAAAGCAATAAAAAATCACAAGCCGTCTGTACTTTTAGGCTTTGA TATGTCTGAACTTAAAAATGTTAAACATAGATTGAACTTTGAATATGAACCACAAAACTT GTAAAAAAAATTAGGAAATTTAAAATACTAGATAATTAGTTTTTTCAATTGAGATTTAAA AAAATGTTATTTTCTTCACTGTACGTTGAAATAATCAATTCAGTGGTCTTTATGCTGCTC TTTAGATTTATTTCAGGTGCTCAGAAAGACTTCTATATAAAGAAGTGAATAGGTCTTTCA GATTTATTGTTTCCTGCAGTTTGATTTTGTAACAATTATTTTTCATTTTTTCTTCTGTCA TGTAAATTAAATCTTTTGATATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
480-599, + strand, RNAz p=0.609324 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
480-599, + strand, RNAz p=0.609324 |
Aligned organism(s): 22 entry(ies) | More info |
Aligned organism(s): 22 entry(ies) | Help | Less info |
1-986, gnl|bosTau2|chr24 (5788927-5789916) | |
1-986, gnl|Hg17|chr18 (75996970-75997953) | |
1-986, gnl|Mm7|chr18 (80414763-80413827) | |
431-702, gnl|bosTau2|chr13 (59141709-59141979) | |
431-702, gnl|canFam2|chr24 (40196783-40197964) | |
431-702, gnl|danRer3|chr23 (23007945-23006738) | |
431-702, gnl|dasNov1|scaffold_32855 (3779-4960) | |
431-702, gnl|echTel1|scaffold_288267 (55947-54766) | |
431-702, gnl|fr1|chrUn (319033791-319035035) | |
431-702, gnl|galGal2|chr20 (13036685-13035506) | |
431-702, gnl|hg17|chr20 (48942127-48943308) | |
431-702, gnl|Hg17|chr20 (48942406-48942136) | |
431-702, gnl|loxAfr1|scaffold_29565 (10403-9225) | |
431-702, gnl|mm7|chr2 (167975500-167976681) | |
431-702, gnl|Mm7|chr2 (167975779-167975509) | |
431-702, gnl|monDom2|scaffold_1 (162796825-162798006) | |
431-702, gnl|oryCun1|scaffold_204453 (17466-18647) | |
431-702, gnl|panTro1|chr21 (51680759-51681940) | |
431-702, gnl|rheMac2|chr10 (13569355-13568174) | |
431-702, gnl|rn3|chr3 (159254253-159255434) | |
431-702, gnl|tetNig1|chrUn_random (94643246-94644471) | |
431-702, gnl|xenTro1|scaffold_165 (1354240-1355436) |
Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-986, gnl|bosTau2|chr24 (5788927-5789916) | |
1-986, gnl|Hg17|chr18 (75996970-75997953) | |
1-986, gnl|Mm7|chr18 (80414763-80413827) | |
431-702, gnl|bosTau2|chr13 (59141709-59141979) | |
431-702, gnl|canFam2|chr24 (40196783-40197964) | |
431-702, gnl|danRer3|chr23 (23007945-23006738) | |
431-702, gnl|dasNov1|scaffold_32855 (3779-4960) | |
431-702, gnl|echTel1|scaffold_288267 (55947-54766) | |
431-702, gnl|fr1|chrUn (319033791-319035035) | |
431-702, gnl|galGal2|chr20 (13036685-13035506) | |
431-702, gnl|hg17|chr20 (48942127-48943308) | |
431-702, gnl|Hg17|chr20 (48942406-48942136) | |
431-702, gnl|loxAfr1|scaffold_29565 (10403-9225) | |
431-702, gnl|mm7|chr2 (167975500-167976681) | |
431-702, gnl|Mm7|chr2 (167975779-167975509) | |
431-702, gnl|monDom2|scaffold_1 (162796825-162798006) | |
431-702, gnl|oryCun1|scaffold_204453 (17466-18647) | |
431-702, gnl|panTro1|chr21 (51680759-51681940) | |
431-702, gnl|rheMac2|chr10 (13569355-13568174) | |
431-702, gnl|rn3|chr3 (159254253-159255434) | |
431-702, gnl|tetNig1|chrUn_random (94643246-94644471) | |
431-702, gnl|xenTro1|scaffold_165 (1354240-1355436) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ova (0.129132) |