Non-Coding RNA Search

Ss1.1-Pig1-37L04.5

Sequence:


               
               GACAGGCGCAAGAAGAAGGCTTGCCCACTCTCCTCCATCTCTCCTCCCATCCCTGGCTTT
TGTGTCGATGCCTCAGAGCTGCTAGGAGGGTGCGCTGGAGAAGGGGGGGGCTGGGGTGAG
AGGCACCCCCTTCACGCGCGCGCGCACACACACACGTTGCCGGCGCACGCACACGCGCGG
ACACACACTCACAGACACGCACACACACACACACACACACACGCACAAAGCTCGCTCGCC
TCGAGCGCACTAACGTGGCCGTTTTCTTTGTGTGGAGCCCTCAAGGGGGGTTGGGGCCCC
GGTCCGGTCCGGGGGAGATGGCGCAGCCCATCCTGGGCCATGGGAACCTACAGCCCGCCT
CGGCCGCTGGCCTGGCGTCCCTGGAGCTGGACTCATCGCTGGACCAGTACGTGCAGATTC
GCATCTTCAAAATCATCGTGATTGGAGACTCCAACGTGGGCAAGACCTGTCTGACCTTCC
GCTTCTGTGGGGGGACCTTCCCGGACAAGACTGAGGCCACCATTGGCGTGGACTTCAGGG
AGAAGACGGTGGAAATCGAGGGCGAGAAGATCAAGGTTCAAGTGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGCGCAAGAAGAAGGCTTGCCCACTCTCCTCCATCTCTCCTCCCATCCCTGGCTTT
TGTGTCGATGCCTCAGAGCTGCTAGGAGGGTGCGCTGGAGAAGGGGGGGGCTGGGGTGAG
AGGCACCCCCTTCACGCGCGCGCGCACACACACACGTTGCCGGCGCACGCACACGCGCGG
ACACACACTCACAGACACGCACACACACACACACACACACACGCACAAAGCTCGCTCGCC
TCGAGCGCACTAACGTGGCCGTTTTCTTTGTGTGGAGCCCTCAAGGGGGGTTGGGGCCCC
GGTCCGGTCCGGGGGAGATGGCGCAGCCCATCCTGGGCCATGGGAACCTACAGCCCGCCT
CGGCCGCTGGCCTGGCGTCCCTGGAGCTGGACTCATCGCTGGACCAGTACGTGCAGATTC
GCATCTTCAAAATCATCGTGATTGGAGACTCCAACGTGGGCAAGACCTGTCTGACCTTCC
GCTTCTGTGGGGGGACCTTCCCGGACAAGACTGAGGCCACCATTGGCGTGGACTTCAGGG
AGAAGACGGTGGAAATCGAGGGCGAGAAGATCAAGGTTCAAGTGTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-188, - strand, RNAz p=0.872761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-188, - strand, RNAz p=0.872761

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-577, gnl|bosTau2|chrX (4010472-4011043)
               

               
               2-577, gnl|Hg17|chrX (129031262-129031831)
               

               
               2-577, gnl|Mm7|chrX (43611522-43612112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-577, gnl|bosTau2|chrX (4010472-4011043)
               

               
               2-577, gnl|Hg17|chrX (129031262-129031831)
               

               
               2-577, gnl|Mm7|chrX (43611522-43612112)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	2-577, gnl\|bosTau2\|chrX (4010472-4011043)
	2-577, gnl\|Hg17\|chrX (129031262-129031831)
	2-577, gnl\|Mm7\|chrX (43611522-43612112)