Ss1.1-Pig1-38J07.5
|
GTCCTTTCTCGTGCTGCTCCGTACGGCGTGGCCTCAATCAGATGGACAGGTCCTCACCCC
AAAGCCTCGGGACATCTCAAAAACTCATCCTTCAAGATTGTAAATGAAACAGTAATTACG
AAGTTGTGGACACTTATTATTTGGATGTGATCTCTTAGTTAACAAGAACCTATACTGGGG
ACTCCTCAAACCTCAGACTCGTTCCTTAATGGTCCTGCTGGACGGAATGCCTCAGGCGTG
TCCAGGTGCTGGAGTTGGCTTCTTAGGAGGAGTGGAGAGGCGACAAGTCGCTGTCCCTCA
CCCGACTCTGGCCACATTCCGAAGATGTGCGGAAACAGGAAACAGATTCTCGGTATTTGT
ACAGCTCGAGCACTTTTTACAGTTTTGGTTAATTTGGTTTTAATCAAATAAGTTTTCAGC
ACTTGGACTGCTCTAGGCACTAAAGGGCACAACGTCAGTTGGGTGGATCCTCCCAGGCCA
GCTGTGAGGTAGTTTGCCAAAGCTGCAGCCTCATCACGAAGCATTTTCCGTACTGTTCCT
AAGAAGAGGCCACCGTACCAAATCTCAGAAGCAGACAGCTCTCAATTCTTAGAGGAAAAA
TAAAGTTGGACTTAAGTTTTTAGCATCATTGCCCTTTTTTAAAACATAGGTTTTACAAGA
TAATACATTTTTACAATTACCTGGTGTGGATACAACTTTGAACCTTGGCAAAAAGCGGAC
CGTTACTTGCGTCTCAGAGTCTCGGTTTTGGCAAGTCTAACAGTTCAGGGCTCTGTTTAG
TGTCCATTCCCGTGAATATGATGATCCTGAACCCCTGTTCCTCCACAAGCAGGGTCTTCC
TCCTCTGATGCAACAGCCGTAACCTCTGGGAAGGAAAGCTGTCAGCGTCCAGGACTCCAG
GAAGCAGCCGGCGGGATTCGCAGGAAAACAAAAGCATTTGCCCCACAGTTCCTAAAACGG
GGATGTGCCTCTCATTTTACTGATGGGGACTATACATGAACACAGTTCATTACAGTAACA
CTTTGAATATGAAATATAGAATCTTAAAATAAGAGCATAATCTGTAAATTATAACCAGTT
TTCAATAGCAAAGTTTAACAATAAAGCTACCTAAGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCCTTTCTCGTGCTGCTCCGTACGGCGTGGCCTCAATCAGATGGACAGGTCCTCACCCC
AAAGCCTCGGGACATCTCAAAAACTCATCCTTCAAGATTGTAAATGAAACAGTAATTACG
AAGTTGTGGACACTTATTATTTGGATGTGATCTCTTAGTTAACAAGAACCTATACTGGGG
ACTCCTCAAACCTCAGACTCGTTCCTTAATGGTCCTGCTGGACGGAATGCCTCAGGCGTG
TCCAGGTGCTGGAGTTGGCTTCTTAGGAGGAGTGGAGAGGCGACAAGTCGCTGTCCCTCA
CCCGACTCTGGCCACATTCCGAAGATGTGCGGAAACAGGAAACAGATTCTCGGTATTTGT
ACAGCTCGAGCACTTTTTACAGTTTTGGTTAATTTGGTTTTAATCAAATAAGTTTTCAGC
ACTTGGACTGCTCTAGGCACTAAAGGGCACAACGTCAGTTGGGTGGATCCTCCCAGGCCA
GCTGTGAGGTAGTTTGCCAAAGCTGCAGCCTCATCACGAAGCATTTTCCGTACTGTTCCT
AAGAAGAGGCCACCGTACCAAATCTCAGAAGCAGACAGCTCTCAATTCTTAGAGGAAAAA
TAAAGTTGGACTTAAGTTTTTAGCATCATTGCCCTTTTTTAAAACATAGGTTTTACAAGA
TAATACATTTTTACAATTACCTGGTGTGGATACAACTTTGAACCTTGGCAAAAAGCGGAC
CGTTACTTGCGTCTCAGAGTCTCGGTTTTGGCAAGTCTAACAGTTCAGGGCTCTGTTTAG
TGTCCATTCCCGTGAATATGATGATCCTGAACCCCTGTTCCTCCACAAGCAGGGTCTTCC
TCCTCTGATGCAACAGCCGTAACCTCTGGGAAGGAAAGCTGTCAGCGTCCAGGACTCCAG
GAAGCAGCCGGCGGGATTCGCAGGAAAACAAAAGCATTTGCCCCACAGTTCCTAAAACGG
GGATGTGCCTCTCATTTTACTGATGGGGACTATACATGAACACAGTTCATTACAGTAACA
CTTTGAATATGAAATATAGAATCTTAAAATAAGAGCATAATCTGTAAATTATAACCAGTT
TTCAATAGCAAAGTTTAACAATAAAGCTACCTAAGT
|
|
3-278, gnl|bosTau2|chr16 (11403465-11403189) |
|
3-278, gnl|Hg17|chr1 (216711400-216711674) |
| |
|
309-730, gnl|bosTau2|chr16 (11403114-11402691) |
|
309-730, gnl|Hg17|chr1 (216711751-216712295) |
|
309-730, gnl|Mm7|chr1 (184810579-184810187) |
| |
|
837-1116, gnl|bosTau2|chr16 (11402573-11402277) |
|
837-1116, gnl|canFam2|chr38 (17927834-17928288) |
|
837-1116, gnl|dasNov1|scaffold_3780 (19676-19200) |
|
837-1116, gnl|echTel1|scaffold_286232 (30153-29693) |
|
837-1116, gnl|galGal2|chr3 (15118137-15117685) |
|
837-1116, gnl|hg17|chr1 (216712415-216712890) |
|
837-1116, gnl|Hg17|chr1 (216712414-216712722) |
|
837-1116, gnl|loxAfr1|scaffold_641 (69936-70397) |
|
837-1116, gnl|mm7|chr1 (184810073-184809653) |
|
837-1116, gnl|Mm7|chr1 (184810075-184809801) |
|
837-1116, gnl|monDom2|scaffold_13 (26277574-26278048) |
|
837-1116, gnl|oryCun1|scaffold_197482 (45844-45373) |
|
837-1116, gnl|panTro1|chr1 (200440508-200440984) |
|
837-1116, gnl|rheMac2|chr1 (150211958-150211480) |
|
837-1116, gnl|rn3|chr13 (101478924-101478505) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-278, gnl|bosTau2|chr16 (11403465-11403189) |
|
3-278, gnl|Hg17|chr1 (216711400-216711674) |
| |
|
309-730, gnl|bosTau2|chr16 (11403114-11402691) |
|
309-730, gnl|Hg17|chr1 (216711751-216712295) |
|
309-730, gnl|Mm7|chr1 (184810579-184810187) |
| |
|
837-1116, gnl|bosTau2|chr16 (11402573-11402277) |
|
837-1116, gnl|canFam2|chr38 (17927834-17928288) |
|
837-1116, gnl|dasNov1|scaffold_3780 (19676-19200) |
|
837-1116, gnl|echTel1|scaffold_286232 (30153-29693) |
|
837-1116, gnl|galGal2|chr3 (15118137-15117685) |
|
837-1116, gnl|hg17|chr1 (216712415-216712890) |
|
837-1116, gnl|Hg17|chr1 (216712414-216712722) |
|
837-1116, gnl|loxAfr1|scaffold_641 (69936-70397) |
|
837-1116, gnl|mm7|chr1 (184810073-184809653) |
|
837-1116, gnl|Mm7|chr1 (184810075-184809801) |
|
837-1116, gnl|monDom2|scaffold_13 (26277574-26278048) |
|
837-1116, gnl|oryCun1|scaffold_197482 (45844-45373) |
|
837-1116, gnl|panTro1|chr1 (200440508-200440984) |
|
837-1116, gnl|rheMac2|chr1 (150211958-150211480) |
|
837-1116, gnl|rn3|chr13 (101478924-101478505) |
|
cje (0.165235) |
|
fat (0.147427) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
cje (0.165235) |
|
fat (0.147427) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
