Non-Coding RNA Search

Ss1.1-Pig1-38J08.5

Sequence:


               
               GGCAAACCAGCCACCAGCCACTGACTGCAAAACTGCCTGATGCAGTTGGCTTCCTCCTGG
TTTTCTTTCCTTAAAATCACCCTGAGTTGACTCATTTTCACATGTTTACATGAAATCCAA
GGAGCCTCGTGTATAGGCTCTGTGCTCAGTCTTGGGTATTGACTCCTGACTTCTAGAGCA
TCGAAGGAGAGAGCCAGGGAAACACAGCCACTGAATGGTTCTCCAGTGCCCCCGTCTTTT
ATGCGTTAAGTTCTTTGGGGGGAAGAAAAGTTACGTATCCTGTGATGCTCTGCTTCACTC
CTTTCCTGATTGGGAATGATGGAAGTAGGAGACAAGTTATTGGTGCCAAAGAGCTGCAGA
TCTGACAGGTTGGGCCTGAGTGTTGAGCTTAGTTAGCAGCAGGCTGAGCAGAGCATGTTT
GTCATCTCCGCGAGGCCCGAAAGGGGTCACAGGAGAGGCAGATGACAGAAGCTGGGGCAA
GGTCATAACTCAAAGAGCCAAACGCCTGTCCTGGGCACGTTTTCCCGTCTGTTGCCGCCC
AAGGCCTTTGGGTGGTTGGCGGGGGCCGCGTGCAGCATCCGGCTCGCTCTGCACTAGACG
CGTGCACTCGGTTGCTTCGCTGCCTCCACCTTCTTTCCAGCTCTGGCTCTGGGATGTACA
GAGGGTTGAGGGTTATAGACAATCTCCAGGGGGGCGGGACAAGAAACAGAGCAGACAGAA
GAGATGTGCTTTCCTGCTGTGCCTCCCCCAGCACTCCACCCTCTTAAGTCCCAGGTACCT
CCAGTGGGCTCTTTCCTCCTTCCTCTGAAGTAAGGACTTTAGAGCCGACTGGTAGGGAAG
GACTCTGCATCTGTTGTTTTAGGGAAGAAATGGTTCAGCCCCACGTGGTGATGCTGCCTT
TCCTGATTCACTGTTTCCTGATTCTTACTCTGTAATTGTTTGTTATATTTCCCCCCCCGC
CCCCGATGTCTTGGTCACTAAGCAAAGCTGCTAGTGGGATCCTGTATTTCGTGTCATCTT
TTTTTATTATAATTTATTGCAAATTTTTTTCTGAATAAATATATGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAACCAGCCACCAGCCACTGACTGCAAAACTGCCTGATGCAGTTGGCTTCCTCCTGG
TTTTCTTTCCTTAAAATCACCCTGAGTTGACTCATTTTCACATGTTTACATGAAATCCAA
GGAGCCTCGTGTATAGGCTCTGTGCTCAGTCTTGGGTATTGACTCCTGACTTCTAGAGCA
TCGAAGGAGAGAGCCAGGGAAACACAGCCACTGAATGGTTCTCCAGTGCCCCCGTCTTTT
ATGCGTTAAGTTCTTTGGGGGGAAGAAAAGTTACGTATCCTGTGATGCTCTGCTTCACTC
CTTTCCTGATTGGGAATGATGGAAGTAGGAGACAAGTTATTGGTGCCAAAGAGCTGCAGA
TCTGACAGGTTGGGCCTGAGTGTTGAGCTTAGTTAGCAGCAGGCTGAGCAGAGCATGTTT
GTCATCTCCGCGAGGCCCGAAAGGGGTCACAGGAGAGGCAGATGACAGAAGCTGGGGCAA
GGTCATAACTCAAAGAGCCAAACGCCTGTCCTGGGCACGTTTTCCCGTCTGTTGCCGCCC
AAGGCCTTTGGGTGGTTGGCGGGGGCCGCGTGCAGCATCCGGCTCGCTCTGCACTAGACG
CGTGCACTCGGTTGCTTCGCTGCCTCCACCTTCTTTCCAGCTCTGGCTCTGGGATGTACA
GAGGGTTGAGGGTTATAGACAATCTCCAGGGGGGCGGGACAAGAAACAGAGCAGACAGAA
GAGATGTGCTTTCCTGCTGTGCCTCCCCCAGCACTCCACCCTCTTAAGTCCCAGGTACCT
CCAGTGGGCTCTTTCCTCCTTCCTCTGAAGTAAGGACTTTAGAGCCGACTGGTAGGGAAG
GACTCTGCATCTGTTGTTTTAGGGAAGAAATGGTTCAGCCCCACGTGGTGATGCTGCCTT
TCCTGATTCACTGTTTCCTGATTCTTACTCTGTAATTGTTTGTTATATTTCCCCCCCCGC
CCCCGATGTCTTGGTCACTAAGCAAAGCTGCTAGTGGGATCCTGTATTTCGTGTCATCTT
TTTTTATTATAATTTATTGCAAATTTTTTTCTGAATAAATATATGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               722-841, - strand, RNAz p=0.888823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               722-841, - strand, RNAz p=0.888823

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1068, gnl|bosTau2|chrX (5462284-5461221)
               

               
               13-1068, gnl|Hg17|chrX (128451047-128452059)
               

               
               13-1068, gnl|Mm7|chrX (43057073-43058112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1068, gnl|bosTau2|chrX (5462284-5461221)
               

               
               13-1068, gnl|Hg17|chrX (128451047-128452059)
               

               
               13-1068, gnl|Mm7|chrX (43057073-43058112)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

	13-1068, gnl\|bosTau2\|chrX (5462284-5461221)
	13-1068, gnl\|Hg17\|chrX (128451047-128452059)
	13-1068, gnl\|Mm7\|chrX (43057073-43058112)