Ss1.1-Pig1-39H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAAATGAAAGCAGGCTGTAGCATCGTGGAAAAGCCAGAAGGAGGTGGAGGGTATCAGT TTCCTGACTGGGCCTATAAAACAGAGTCATCCCCAGGCTCCCGGCAGATCCAGCTGTGGC ACTTTATCCTGGAGCTGCTGCAGAAGGAGGAGTTCCGCCATGTCATCGCCTGGCAGCAGG GAGAATACGGGGAATTCGTCATCAAGGATCCCGACGAGGTGGCCCGCCTCTGGGGCCGCA GGAAGTGCAAACCACAGATGAATTATGACAAGCTGAGCCGGGCCCTGAGATACTATTACA ACAAGAGGATCCTTCATAAAACAAAAGGGAAAAGGTTTACTTATAAATTTAACTTCAACA AGCTGGTGATGCCCAACTACCCATTCATCAACATTCGGTCAAATGGTGTGGTCCCCCAGA GTGCGCCACCAGTGCCAACAGCCTCTTCCCGGTTCCATTTCCCACCTCTGGAGACCCATT CCCCGACTAGCGATGTGCAGCCAGGCCGGTTCTCTGCCAGCTCCCTCCCTGCTTCTGGCC AGGAGCCAAGTAATGGCACCGATAGAAAGGTGGAGCTTTCGGAGCTGGAGGATGGCCCAG CCGCTGACTGGCGCCGGGGCGTGGATCTCCTGTCCTCCCGGAATGCTGTCAGTGGAGGGC TGGGCCATCCGAAGCGCAAGCCTGACATCATGCTTCCTCTGTTCACTAGGCCGGGGATAT ACCCCGACCCCCACAGCCCCTTCGCCGTCTCTCCGATCCCTAGCCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAAATGAAAGCAGGCTGTAGCATCGTGGAAAAGCCAGAAGGAGGTGGAGGGTATCAGT TTCCTGACTGGGCCTATAAAACAGAGTCATCCCCAGGCTCCCGGCAGATCCAGCTGTGGC ACTTTATCCTGGAGCTGCTGCAGAAGGAGGAGTTCCGCCATGTCATCGCCTGGCAGCAGG GAGAATACGGGGAATTCGTCATCAAGGATCCCGACGAGGTGGCCCGCCTCTGGGGCCGCA GGAAGTGCAAACCACAGATGAATTATGACAAGCTGAGCCGGGCCCTGAGATACTATTACA ACAAGAGGATCCTTCATAAAACAAAAGGGAAAAGGTTTACTTATAAATTTAACTTCAACA AGCTGGTGATGCCCAACTACCCATTCATCAACATTCGGTCAAATGGTGTGGTCCCCCAGA GTGCGCCACCAGTGCCAACAGCCTCTTCCCGGTTCCATTTCCCACCTCTGGAGACCCATT CCCCGACTAGCGATGTGCAGCCAGGCCGGTTCTCTGCCAGCTCCCTCCCTGCTTCTGGCC AGGAGCCAAGTAATGGCACCGATAGAAAGGTGGAGCTTTCGGAGCTGGAGGATGGCCCAG CCGCTGACTGGCGCCGGGGCGTGGATCTCCTGTCCTCCCGGAATGCTGTCAGTGGAGGGC TGGGCCATCCGAAGCGCAAGCCTGACATCATGCTTCCTCTGTTCACTAGGCCGGGGATAT ACCCCGACCCCCACAGCCCCTTCGCCGTCTCTCCGATCCCTAGCCGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 60-680, + strand, RNAz p=0.788483 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 60-680, + strand, RNAz p=0.788483 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 50-292, gnl|bosTau2|chr3 (10147627-10147385) | |
| 50-292, gnl|canFam2|chr7 (43925797-43925529) | |
| 50-292, gnl|danRer3|chr19 (1512720-1512963) | |
| 50-292, gnl|dasNov1|scaffold_8421 (43241-43001) | |
| 50-292, gnl|echTel1|scaffold_287448 (5307-5043) | |
| 50-292, gnl|fr1|chrUn (224542347-224542093) | |
| 50-292, gnl|galGal2|chrUn (30927433-30927696) | |
| 50-292, gnl|hg17|chr1 (153918312-153918576) | |
| 50-292, gnl|Hg17|chr1 (153918575-153918333) | |
| 50-292, gnl|loxAfr1|scaffold_39518 (10614-10878) | |
| 50-292, gnl|mm7|chr3 (87641935-87641670) | |
| 50-292, gnl|Mm7|chr3 (87641669-87641912) | |
| 50-292, gnl|monDom2|scaffold_59 (24642-24373) | |
| 50-292, gnl|oryCun1|scaffold_198293 (66561-66825) | |
| 50-292, gnl|panTro1|chr1 (135884993-135885257) | |
| 50-292, gnl|rheMac2|chr1 (135742359-135742623) | |
| 50-292, gnl|rn3|chr2 (179518110-179517845) | |
| 50-292, gnl|tetNig1|chr8 (9490058-9489829) | |
| 50-292, gnl|xenTro1|scaffold_477 (971222-970958) | |
| 60-287, gnl|bosTau2|chr18 (44662646-44662422) | |
| 60-287, gnl|canFam2|chr1 (115016611-115016339) | |
| 60-287, gnl|danRer3|chr16 (22647234-22647491) | |
| 60-287, gnl|dasNov1|scaffold_146605 (692-959) | |
| 60-287, gnl|echTel1|scaffold_301027 (4738-4469) | |
| 60-287, gnl|fr1|chrUn (302085005-302084746) | |
| 60-287, gnl|galGal2|chrUn (30927443-30927714) | |
| 60-287, gnl|hg17|chr19 (47105842-47106110) | |
| 60-287, gnl|Hg17|chr19 (47106081-47105857) | |
| 60-287, gnl|loxAfr1|scaffold_39518 (10628-10878) | |
| 60-287, gnl|mm7|chr7 (21718609-21718877) | |
| 60-287, gnl|Mm7|chr7 (21718848-21718624) | |
| 60-287, gnl|monDom2|scaffold_59 (24623-24355) | |
| 60-287, gnl|oryCun1|scaffold_201459 (45491-45223) | |
| 60-287, gnl|panTro1|chr20 (43986089-43986357) | |
| 60-287, gnl|rheMac2|chr19 (48567643-48567911) | |
| 60-287, gnl|rn3|chr1 (80307087-80307355) | |
| 60-287, gnl|tetNig1|chr8 (738401-738647) | |
| 60-287, gnl|xenTro1|scaffold_993 (182503-182771) | |
| 405-766, gnl|bosTau2|chr3 (10139906-10139545) | |
| 405-766, gnl|Hg17|chr1 (153908845-153908481) | |
| 405-766, gnl|Mm7|chr3 (87649311-87649675) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-292, gnl|bosTau2|chr3 (10147627-10147385) | |
| 50-292, gnl|canFam2|chr7 (43925797-43925529) | |
| 50-292, gnl|danRer3|chr19 (1512720-1512963) | |
| 50-292, gnl|dasNov1|scaffold_8421 (43241-43001) | |
| 50-292, gnl|echTel1|scaffold_287448 (5307-5043) | |
| 50-292, gnl|fr1|chrUn (224542347-224542093) | |
| 50-292, gnl|galGal2|chrUn (30927433-30927696) | |
| 50-292, gnl|hg17|chr1 (153918312-153918576) | |
| 50-292, gnl|Hg17|chr1 (153918575-153918333) | |
| 50-292, gnl|loxAfr1|scaffold_39518 (10614-10878) | |
| 50-292, gnl|mm7|chr3 (87641935-87641670) | |
| 50-292, gnl|Mm7|chr3 (87641669-87641912) | |
| 50-292, gnl|monDom2|scaffold_59 (24642-24373) | |
| 50-292, gnl|oryCun1|scaffold_198293 (66561-66825) | |
| 50-292, gnl|panTro1|chr1 (135884993-135885257) | |
| 50-292, gnl|rheMac2|chr1 (135742359-135742623) | |
| 50-292, gnl|rn3|chr2 (179518110-179517845) | |
| 50-292, gnl|tetNig1|chr8 (9490058-9489829) | |
| 50-292, gnl|xenTro1|scaffold_477 (971222-970958) | |
| 60-287, gnl|bosTau2|chr18 (44662646-44662422) | |
| 60-287, gnl|canFam2|chr1 (115016611-115016339) | |
| 60-287, gnl|danRer3|chr16 (22647234-22647491) | |
| 60-287, gnl|dasNov1|scaffold_146605 (692-959) | |
| 60-287, gnl|echTel1|scaffold_301027 (4738-4469) | |
| 60-287, gnl|fr1|chrUn (302085005-302084746) | |
| 60-287, gnl|galGal2|chrUn (30927443-30927714) | |
| 60-287, gnl|hg17|chr19 (47105842-47106110) | |
| 60-287, gnl|Hg17|chr19 (47106081-47105857) | |
| 60-287, gnl|loxAfr1|scaffold_39518 (10628-10878) | |
| 60-287, gnl|mm7|chr7 (21718609-21718877) | |
| 60-287, gnl|Mm7|chr7 (21718848-21718624) | |
| 60-287, gnl|monDom2|scaffold_59 (24623-24355) | |
| 60-287, gnl|oryCun1|scaffold_201459 (45491-45223) | |
| 60-287, gnl|panTro1|chr20 (43986089-43986357) | |
| 60-287, gnl|rheMac2|chr19 (48567643-48567911) | |
| 60-287, gnl|rn3|chr1 (80307087-80307355) | |
| 60-287, gnl|tetNig1|chr8 (738401-738647) | |
| 60-287, gnl|xenTro1|scaffold_993 (182503-182771) | |
| 405-766, gnl|bosTau2|chr3 (10139906-10139545) | |
| 405-766, gnl|Hg17|chr1 (153908845-153908481) | |
| 405-766, gnl|Mm7|chr3 (87649311-87649675) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) |