Ss1.1-Pig1-3A23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGACGGCGTCGTGCTGGTGTACGGGCTTCACGGTGACTTCCGGAGACACTTCAGCAT GGGCAACGAGGTGCTCCAGAACCGGGTTCTAGATGCCCGCATCTTCCATACCGAGCTTGG TTCTGGGGTGGCCATCCTCACAGGGGCCCACCGCTTCACCCTCAGCGCCAACGTGAGCGA CCTCAAACTCCGCCGGATGCCAGAGGTGCCAGGTCTGCAGAGTGCACCCTCGTGCTGGAC CACGCTGTGCCGGGACCGAGTGGCACACATTCTTCTGGCCGTGGGACCTGATCTTTACCT CCTGGACCACGCGACCTGCTCCCCAGTGACACTCCCCGGCCTGGCCCCAGGAGTGAGCAG CTTCCTGCAGATGGCTGTCTCCTTCACCAGCCGGCATCTGGCGCTCTTCACAGACACAGG CTACATCTGGATGGGCACGGCATCCTTCAAGGAGAAGCTGTGTGAGTTCAACTGCAACAT CCGGGCCCCCCCGAAACAGATGGTCTGGTGCAGCCGTCCTCGCAGCAAGGAGAGGGCTGT TGTGGTGGCCTGGGAGAGGCGGCTCATGGTGGTGGGTGACACACCTGAGAGCATCCAGTT TGTGCTGGACGAGGACTCCTACCTGGTGCCTGAGCTGGATGGAGTCCGCATCTTCTCCCG CACCACCCACGAGTTCTTGCACGAGGTTCCAGTGGCCAGTGAGGAGATCTTTAAAATCGC CTCGATGGCCCCCGGAGCGCTGCTGCTGGAGGCCCAGAAGGAGTATGAGAAAGAGAGCCA GAAGGCGGATGAGTACCTGCGGGAGATCCAGGAGCTGGGGCAGCTGCCCCAGGCCGTGCA GCAGTGCATCGAGGCTGCAGGACATGAGCACTGGCCAGACATGCAGAAGAGTCTGCTCAG GGCGGCCTCCTTCGGAAAGTGTTTCCTGGACAGGTTTCCACCCGACAGCTTCGTGCGCAT GTGTCAGGATCTTCGTATACTCAATGCCATCCGGGACTATCACATCGGGATCCCCCTTAC CTATAGCCAATACAAGCAACTCACCATCCAGGTGCTGCTGGACAGGTTTGTATTGCGGAG GCTTTACCCCCTGGCCATTCAGATCTGAGAGTACCTGCGGCTTCCTGAGGTGCAGGGCGT CAACAGGATCCTGGCCCACTGGGCCTGCTACAAGGCACAACAGAAGGATGTGTCTGATGA GGATGTTGCTCGGGCCATTAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGACGGCGTCGTGCTGGTGTACGGGCTTCACGGTGACTTCCGGAGACACTTCAGCAT GGGCAACGAGGTGCTCCAGAACCGGGTTCTAGATGCCCGCATCTTCCATACCGAGCTTGG TTCTGGGGTGGCCATCCTCACAGGGGCCCACCGCTTCACCCTCAGCGCCAACGTGAGCGA CCTCAAACTCCGCCGGATGCCAGAGGTGCCAGGTCTGCAGAGTGCACCCTCGTGCTGGAC CACGCTGTGCCGGGACCGAGTGGCACACATTCTTCTGGCCGTGGGACCTGATCTTTACCT CCTGGACCACGCGACCTGCTCCCCAGTGACACTCCCCGGCCTGGCCCCAGGAGTGAGCAG CTTCCTGCAGATGGCTGTCTCCTTCACCAGCCGGCATCTGGCGCTCTTCACAGACACAGG CTACATCTGGATGGGCACGGCATCCTTCAAGGAGAAGCTGTGTGAGTTCAACTGCAACAT CCGGGCCCCCCCGAAACAGATGGTCTGGTGCAGCCGTCCTCGCAGCAAGGAGAGGGCTGT TGTGGTGGCCTGGGAGAGGCGGCTCATGGTGGTGGGTGACACACCTGAGAGCATCCAGTT TGTGCTGGACGAGGACTCCTACCTGGTGCCTGAGCTGGATGGAGTCCGCATCTTCTCCCG CACCACCCACGAGTTCTTGCACGAGGTTCCAGTGGCCAGTGAGGAGATCTTTAAAATCGC CTCGATGGCCCCCGGAGCGCTGCTGCTGGAGGCCCAGAAGGAGTATGAGAAAGAGAGCCA GAAGGCGGATGAGTACCTGCGGGAGATCCAGGAGCTGGGGCAGCTGCCCCAGGCCGTGCA GCAGTGCATCGAGGCTGCAGGACATGAGCACTGGCCAGACATGCAGAAGAGTCTGCTCAG GGCGGCCTCCTTCGGAAAGTGTTTCCTGGACAGGTTTCCACCCGACAGCTTCGTGCGCAT GTGTCAGGATCTTCGTATACTCAATGCCATCCGGGACTATCACATCGGGATCCCCCTTAC CTATAGCCAATACAAGCAACTCACCATCCAGGTGCTGCTGGACAGGTTTGTATTGCGGAG GCTTTACCCCCTGGCCATTCAGATCTGAGAGTACCTGCGGCTTCCTGAGGTGCAGGGCGT CAACAGGATCCTGGCCCACTGGGCCTGCTACAAGGCACAACAGAAGGATGTGTCTGATGA GGATGTTGCTCGGGCCATTAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 68-186, + strand, RNAz p=0.807421 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 68-186, + strand, RNAz p=0.807421 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 68-214, gnl|bosTau2|chr13 (41429005-41429151) | |
| 68-214, gnl|canFam2|chr24 (21404331-21404172) | |
| 68-214, gnl|danRer3|chr6 (24755136-24754977) | |
| 68-214, gnl|dasNov1|scaffold_50589 (6943-6784) | |
| 68-214, gnl|echTel1|scaffold_230185 (8555-8395) | |
| 68-214, gnl|fr1|chrUn (227915421-227915573) | |
| 68-214, gnl|galGal2|chrUn (159885767-159885926) | |
| 68-214, gnl|hg17|chr20 (2789093-2789252) | |
| 68-214, gnl|Hg17|chr20 (2789095-2789241) | |
| 68-214, gnl|loxAfr1|scaffold_29224 (24041-23875) | |
| 68-214, gnl|mm7|chr2 (130179158-130179317) | |
| 68-214, gnl|Mm7|chr2 (130179160-130179306) | |
| 68-214, gnl|monDom2|scaffold_10 (48684202-48684357) | |
| 68-214, gnl|oryCun1|scaffold_192983 (6759-6919) | |
| 68-214, gnl|panTro1|chr21 (2766123-2766282) | |
| 68-214, gnl|rheMac2|chr10 (36169910-36170069) | |
| 68-214, gnl|rn3|chr3 (117959087-117959246) | |
| 68-214, gnl|tetNig1|chr3 (30249-30402) | |
| 68-214, gnl|xenTro1|scaffold_1305 (124707-124859) | |
| 328-452, gnl|bosTau2|chr13 (41429487-41429611) | |
| 328-452, gnl|Hg17|chr20 (2789615-2789739) | |
| 328-452, gnl|Mm7|chr2 (130179635-130179759) | |
| 768-908, gnl|bosTau2|chr13 (41431097-41431238) | |
| 768-908, gnl|canFam2|chr24 (21402290-21402118) | |
| 768-908, gnl|danRer3|chr6 (24745643-24745502) | |
| 768-908, gnl|echTel1|scaffold_230185 (6825-6657) | |
| 768-908, gnl|fr1|chrUn (227917397-227917563) | |
| 768-908, gnl|galGal2|chrUn (159888856-159889015) | |
| 768-908, gnl|hg17|chr20 (2791206-2791372) | |
| 768-908, gnl|Hg17|chr20 (2791223-2791364) | |
| 768-908, gnl|mm7|chr2 (130181066-130181233) | |
| 768-908, gnl|Mm7|chr2 (130181082-130181223) | |
| 768-908, gnl|monDom2|scaffold_10 (48686507-48686681) | |
| 768-908, gnl|oryCun1|scaffold_192983 (8903-9067) | |
| 768-908, gnl|panTro1|chr21 (2768437-2768603) | |
| 768-908, gnl|rheMac2|chr10 (36172028-36172194) | |
| 768-908, gnl|rn3|chr3 (117960928-117961094) | |
| 768-908, gnl|tetNig1|chr3 (32099-32248) | |
| 768-908, gnl|xenTro1|scaffold_1305 (125369-125528) | |
| 1063-1175, gnl|bosTau2|chr13 (41431800-41431912) | |
| 1063-1175, gnl|Hg17|chr20 (2791933-2792045) | |
| 1063-1175, gnl|Mm7|chr2 (130181750-130181862) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-214, gnl|bosTau2|chr13 (41429005-41429151) | |
| 68-214, gnl|canFam2|chr24 (21404331-21404172) | |
| 68-214, gnl|danRer3|chr6 (24755136-24754977) | |
| 68-214, gnl|dasNov1|scaffold_50589 (6943-6784) | |
| 68-214, gnl|echTel1|scaffold_230185 (8555-8395) | |
| 68-214, gnl|fr1|chrUn (227915421-227915573) | |
| 68-214, gnl|galGal2|chrUn (159885767-159885926) | |
| 68-214, gnl|hg17|chr20 (2789093-2789252) | |
| 68-214, gnl|Hg17|chr20 (2789095-2789241) | |
| 68-214, gnl|loxAfr1|scaffold_29224 (24041-23875) | |
| 68-214, gnl|mm7|chr2 (130179158-130179317) | |
| 68-214, gnl|Mm7|chr2 (130179160-130179306) | |
| 68-214, gnl|monDom2|scaffold_10 (48684202-48684357) | |
| 68-214, gnl|oryCun1|scaffold_192983 (6759-6919) | |
| 68-214, gnl|panTro1|chr21 (2766123-2766282) | |
| 68-214, gnl|rheMac2|chr10 (36169910-36170069) | |
| 68-214, gnl|rn3|chr3 (117959087-117959246) | |
| 68-214, gnl|tetNig1|chr3 (30249-30402) | |
| 68-214, gnl|xenTro1|scaffold_1305 (124707-124859) | |
| 328-452, gnl|bosTau2|chr13 (41429487-41429611) | |
| 328-452, gnl|Hg17|chr20 (2789615-2789739) | |
| 328-452, gnl|Mm7|chr2 (130179635-130179759) | |
| 768-908, gnl|bosTau2|chr13 (41431097-41431238) | |
| 768-908, gnl|canFam2|chr24 (21402290-21402118) | |
| 768-908, gnl|danRer3|chr6 (24745643-24745502) | |
| 768-908, gnl|echTel1|scaffold_230185 (6825-6657) | |
| 768-908, gnl|fr1|chrUn (227917397-227917563) | |
| 768-908, gnl|galGal2|chrUn (159888856-159889015) | |
| 768-908, gnl|hg17|chr20 (2791206-2791372) | |
| 768-908, gnl|Hg17|chr20 (2791223-2791364) | |
| 768-908, gnl|mm7|chr2 (130181066-130181233) | |
| 768-908, gnl|Mm7|chr2 (130181082-130181223) | |
| 768-908, gnl|monDom2|scaffold_10 (48686507-48686681) | |
| 768-908, gnl|oryCun1|scaffold_192983 (8903-9067) | |
| 768-908, gnl|panTro1|chr21 (2768437-2768603) | |
| 768-908, gnl|rheMac2|chr10 (36172028-36172194) | |
| 768-908, gnl|rn3|chr3 (117960928-117961094) | |
| 768-908, gnl|tetNig1|chr3 (32099-32248) | |
| 768-908, gnl|xenTro1|scaffold_1305 (125369-125528) | |
| 1063-1175, gnl|bosTau2|chr13 (41431800-41431912) | |
| 1063-1175, gnl|Hg17|chr20 (2791933-2792045) | |
| 1063-1175, gnl|Mm7|chr2 (130181750-130181862) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |