Non-Coding RNA Search

Ss1.1-Pig1-3B02.5

Sequence:


               
               GGGCCTGGGGTCAACTAGGAGCATGAAGCAACGCAGTAACAAATAGTGGGAGGAGCCTTT
GAGCCCCTAAACTTATGGGCCACCCTCGGCCACCACCCGCCCCCCCAGTGCTAACCAGAG
GGGCCCCTGCGGGTGGCAGGCGAATCAAGGGCAGAGCTTGATGCGGGTGCCCTTAGAGAG
CACCCGGAAGAAAGGGAAGACACGCTCGCCCAGGAAGGCAGCCGAAAAGGTATGCACATG
AGCCAGAGTCTCCGCATTGTAGAAGCCCAGGCGCCCAGCCTCATAGTCCAGGTACACGCC
AAAGCGCCGAGGTTTCTCACTTGGGCTCAGCAGTGTCTGCTCCGTCGAGCTCTGTGCCTG
GTAGCGTTTGCCATTGGTGCCCACACACCACACTTCCCGCTGGAGCAGGGGTTGCTGGGG
CAGGTGGAGCCGCCGGCGGCGATGATGATGGCGTGAGGAGCTGGCATCCCCACTGCCCAC
AGAGGACCCCCCGGAGCCCACCTTCTCTTTATGATGGGTTGATTCACGGGCAGCGCCCAC
CGCCCAGCCCCTCCGCCCACCCACCTCTACCTCCCAGTAGTGCCGGCCAGAGCGGAAGCC
CTGGGCCCCCAGTACGCAGCAGTCGGCCGAGAAGCGCTTGGAATGGTCAGCAACCTCCTG
CCGCCGCTCTGCCAGACGGACCCCCCGGCGGTCAGGGGACAGCATCAGGGCCGGGTGAGC
CGTGTCAGGGTCCAACGTCAGGTCCACTTGGAAGGGAGGACAAATACGCCAGGGCTGGAA
CGACTGGTCCCCATTAGCAGCTAACTCCAAGATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCTGGGGTCAACTAGGAGCATGAAGCAACGCAGTAACAAATAGTGGGAGGAGCCTTT
GAGCCCCTAAACTTATGGGCCACCCTCGGCCACCACCCGCCCCCCCAGTGCTAACCAGAG
GGGCCCCTGCGGGTGGCAGGCGAATCAAGGGCAGAGCTTGATGCGGGTGCCCTTAGAGAG
CACCCGGAAGAAAGGGAAGACACGCTCGCCCAGGAAGGCAGCCGAAAAGGTATGCACATG
AGCCAGAGTCTCCGCATTGTAGAAGCCCAGGCGCCCAGCCTCATAGTCCAGGTACACGCC
AAAGCGCCGAGGTTTCTCACTTGGGCTCAGCAGTGTCTGCTCCGTCGAGCTCTGTGCCTG
GTAGCGTTTGCCATTGGTGCCCACACACCACACTTCCCGCTGGAGCAGGGGTTGCTGGGG
CAGGTGGAGCCGCCGGCGGCGATGATGATGGCGTGAGGAGCTGGCATCCCCACTGCCCAC
AGAGGACCCCCCGGAGCCCACCTTCTCTTTATGATGGGTTGATTCACGGGCAGCGCCCAC
CGCCCAGCCCCTCCGCCCACCCACCTCTACCTCCCAGTAGTGCCGGCCAGAGCGGAAGCC
CTGGGCCCCCAGTACGCAGCAGTCGGCCGAGAAGCGCTTGGAATGGTCAGCAACCTCCTG
CCGCCGCTCTGCCAGACGGACCCCCCGGCGGTCAGGGGACAGCATCAGGGCCGGGTGAGC
CGTGTCAGGGTCCAACGTCAGGTCCACTTGGAAGGGAGGACAAATACGCCAGGGCTGGAA
CGACTGGTCCCCATTAGCAGCTAACTCCAAGATTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8VDU9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VDU9_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-240, - strand, RNAz p=0.997322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-240, - strand, RNAz p=0.997322

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AX775789, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AX775789, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-786, gnl|bosTau2|chr7 (27006201-27005425)
               

               
               1-786, gnl|Hg17|chr5 (180594521-180593736)
               

               
               1-786, gnl|Mm7|chr11 (48763859-48764630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-786, gnl|bosTau2|chr7 (27006201-27005425)
               

               
               1-786, gnl|Hg17|chr5 (180594521-180593736)
               

               
               1-786, gnl|Mm7|chr11 (48763859-48764630)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               nco (0.161734)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-786, gnl\|bosTau2\|chr7 (27006201-27005425)
	1-786, gnl\|Hg17\|chr5 (180594521-180593736)
	1-786, gnl\|Mm7\|chr11 (48763859-48764630)