Non-Coding RNA Search

Ss1.1-Pig1-3E07.5

Sequence:


               
               TGGCACTGAACCTGATGGGCTTCGTGGCCTACAGCGTGTTCAACATCGGCCTCCTCTGGG
TGCCCTACATCAAGGAGCAGTTTCTCCTCAAATACCCCAATGGCGTGAACCCCGTGGTCA
GTAACGACGTCTTCTTCAGCCTGCACGCGGTCGCCCTCACACTGGTTGTCCTGGTGCAGT
GCTGCTTGTATGAGCGAGGCAACCAGCGCGTGTCCTGGCCTGCCATCAGCTTCCTGGTGC
TCTCCTGGCTCTTCACCCTCACCGCCTTGATCGTGGCCGCAGTCGGGTCCATCACATGGC
TGCAGTTTCTCTTCTGCTTCTCTTACATCAAGCTGGCGGTGACGCTGATCAAGTATTTCC
CGCAGGCCTACATGAACTTTCACTACAAAAGCACCGAAGGCTGGAGCATTGGCAACGTGC
TACTGGACTTCACCGGGGGCAGCTTCAGCCTCCTCCAGATGTTCCTCCAGTCCTACAACA
ACGACCAGTGGACCCTGATCTTTGGAGACCCAACCAAGTTTGGACTTGGCATCTTCTCCA
TCATCTTCGACATTGTCTTCTTCATCCAGCACTTCTGCTTGTACAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCACTGAACCTGATGGGCTTCGTGGCCTACAGCGTGTTCAACATCGGCCTCCTCTGGG
TGCCCTACATCAAGGAGCAGTTTCTCCTCAAATACCCCAATGGCGTGAACCCCGTGGTCA
GTAACGACGTCTTCTTCAGCCTGCACGCGGTCGCCCTCACACTGGTTGTCCTGGTGCAGT
GCTGCTTGTATGAGCGAGGCAACCAGCGCGTGTCCTGGCCTGCCATCAGCTTCCTGGTGC
TCTCCTGGCTCTTCACCCTCACCGCCTTGATCGTGGCCGCAGTCGGGTCCATCACATGGC
TGCAGTTTCTCTTCTGCTTCTCTTACATCAAGCTGGCGGTGACGCTGATCAAGTATTTCC
CGCAGGCCTACATGAACTTTCACTACAAAAGCACCGAAGGCTGGAGCATTGGCAACGTGC
TACTGGACTTCACCGGGGGCAGCTTCAGCCTCCTCCAGATGTTCCTCCAGTCCTACAACA
ACGACCAGTGGACCCTGATCTTTGGAGACCCAACCAAGTTTGGACTTGGCATCTTCTCCA
TCATCTTCGACATTGTCTTCTTCATCCAGCACTTCTGCTTGTACAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5616103|gb|AAD45630.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5616103|gb|AAD45630.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               483-586, - strand, RNAz p=0.508569
               

               
               483-586, - strand, RNAz p=0.879874

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-586, - strand, RNAz p=0.508569
               

               
               483-586, - strand, RNAz p=0.879874

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               193-366, gnl|bosTau2|chr19 (18925388-18925561)
               

               
               193-366, gnl|Hg17|chr17 (3508046-3508219)
               

               
               193-366, gnl|Mm7|chr11 (73268035-73267862)
               


               
               483-586, gnl|bosTau2|chr19 (18927976-18928079)
               

               
               483-586, gnl|canFam2|chr9 (50816714-50816817)
               

               
               483-586, gnl|danRer3|chr11 (3414784-3414681)
               

               
               483-586, gnl|dasNov1|scaffold_53766 (6151-6048)
               

               
               483-586, gnl|echTel1|scaffold_309910 (40931-41034)
               

               
               483-586, gnl|fr1|chrUn (219336932-219336841)
               

               
               483-586, gnl|galGal2|chr19 (6217602-6217499)
               

               
               483-586, gnl|hg17|chr17 (3510274-3510377)
               

               
               483-586, gnl|Hg17|chr17 (3510278-3510381)
               

               
               483-586, gnl|mm7|chr11 (73266632-73266529)
               

               
               483-586, gnl|Mm7|chr11 (73266626-73266523)
               

               
               483-586, gnl|panTro1|chr19 (3807554-3807657)
               

               
               483-586, gnl|rheMac2|chr16 (3388345-3388448)
               

               
               483-586, gnl|rn3|chr10 (60074840-60074737)
               

               
               483-586, gnl|tetNig1|chrUn_random (49718279-49718382)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-366, gnl|bosTau2|chr19 (18925388-18925561)
               

               
               193-366, gnl|Hg17|chr17 (3508046-3508219)
               

               
               193-366, gnl|Mm7|chr11 (73268035-73267862)
               


               
               483-586, gnl|bosTau2|chr19 (18927976-18928079)
               

               
               483-586, gnl|canFam2|chr9 (50816714-50816817)
               

               
               483-586, gnl|danRer3|chr11 (3414784-3414681)
               

               
               483-586, gnl|dasNov1|scaffold_53766 (6151-6048)
               

               
               483-586, gnl|echTel1|scaffold_309910 (40931-41034)
               

               
               483-586, gnl|fr1|chrUn (219336932-219336841)
               

               
               483-586, gnl|galGal2|chr19 (6217602-6217499)
               

               
               483-586, gnl|hg17|chr17 (3510274-3510377)
               

               
               483-586, gnl|Hg17|chr17 (3510278-3510381)
               

               
               483-586, gnl|mm7|chr11 (73266632-73266529)
               

               
               483-586, gnl|Mm7|chr11 (73266626-73266523)
               

               
               483-586, gnl|panTro1|chr19 (3807554-3807657)
               

               
               483-586, gnl|rheMac2|chr16 (3388345-3388448)
               

               
               483-586, gnl|rn3|chr10 (60074840-60074737)
               

               
               483-586, gnl|tetNig1|chrUn_random (49718279-49718382)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	483-586, - strand, RNAz p=0.508569
	483-586, - strand, RNAz p=0.879874

	193-366, gnl\|bosTau2\|chr19 (18925388-18925561)
	193-366, gnl\|Hg17\|chr17 (3508046-3508219)
	193-366, gnl\|Mm7\|chr11 (73268035-73267862)

	483-586, gnl\|bosTau2\|chr19 (18927976-18928079)
	483-586, gnl\|canFam2\|chr9 (50816714-50816817)
	483-586, gnl\|danRer3\|chr11 (3414784-3414681)
	483-586, gnl\|dasNov1\|scaffold_53766 (6151-6048)
	483-586, gnl\|echTel1\|scaffold_309910 (40931-41034)
	483-586, gnl\|fr1\|chrUn (219336932-219336841)
	483-586, gnl\|galGal2\|chr19 (6217602-6217499)
	483-586, gnl\|hg17\|chr17 (3510274-3510377)
	483-586, gnl\|Hg17\|chr17 (3510278-3510381)
	483-586, gnl\|mm7\|chr11 (73266632-73266529)
	483-586, gnl\|Mm7\|chr11 (73266626-73266523)
	483-586, gnl\|panTro1\|chr19 (3807554-3807657)
	483-586, gnl\|rheMac2\|chr16 (3388345-3388448)
	483-586, gnl\|rn3\|chr10 (60074840-60074737)
	483-586, gnl\|tetNig1\|chrUn_random (49718279-49718382)