Non-Coding RNA Search

Ss1.1-Pig1-3O19.5

Sequence:


               
               CTTTTCTTTACTTCACAGCTTCTCTGAGTGTGGGGGTCATGGGCAATGTGAGTATTAGAC
ATGGAAGAGCCCCCTGAGGGCCTCAAGGGTAATTCTGTTACTTCGCGAGGAGCAAATTGA
AGCCCACGGGGCCTGTGACTTGATTGAGCTCAGCCAGCCTGGATGGTATAGAGAAGCAGA
ATTCCACTCCAAGCCTTTAGACTCCCAAGTCCAATGTCACTGGTCCCCTCCCTTCCATTG
AGTGTTTGGGTTTGCAGGGATGTAAAAATGCCTAAGGGAGGGCTGCTTGTCGAAAAATAA
AAGTGAGATCCTTCGCTGTCTTACACCACCTAAAGCATCGCCCTACGTGTACGATCGGAT
AAGCACGTTCGAGAAAGACTTCTGAGTTCTGTATCTACATTATTAGTGATAGTTTTCTCT
ATAGGTGCAAAATCATTCATGGTCCCTTTTTTCTTCCTCTGAACAGCCACTATGGAAGGA
GAGGTCAGGATTACAGCCGAGGAGACGGGCACAAAGAGTGTTAAGTGACACCCACTCAAT
CCACCTGAAGCTGTTACAATTAATTAACCCTCACACTGCCCGGTGAGATAGGTCAGTATT
AAAACCTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTTTACTTCACAGCTTCTCTGAGTGTGGGGGTCATGGGCAATGTGAGTATTAGAC
ATGGAAGAGCCCCCTGAGGGCCTCAAGGGTAATTCTGTTACTTCGCGAGGAGCAAATTGA
AGCCCACGGGGCCTGTGACTTGATTGAGCTCAGCCAGCCTGGATGGTATAGAGAAGCAGA
ATTCCACTCCAAGCCTTTAGACTCCCAAGTCCAATGTCACTGGTCCCCTCCCTTCCATTG
AGTGTTTGGGTTTGCAGGGATGTAAAAATGCCTAAGGGAGGGCTGCTTGTCGAAAAATAA
AAGTGAGATCCTTCGCTGTCTTACACCACCTAAAGCATCGCCCTACGTGTACGATCGGAT
AAGCACGTTCGAGAAAGACTTCTGAGTTCTGTATCTACATTATTAGTGATAGTTTTCTCT
ATAGGTGCAAAATCATTCATGGTCCCTTTTTTCTTCCTCTGAACAGCCACTATGGAAGGA
GAGGTCAGGATTACAGCCGAGGAGACGGGCACAAAGAGTGTTAAGTGACACCCACTCAAT
CCACCTGAAGCTGTTACAATTAATTAACCCTCACACTGCCCGGTGAGATAGGTCAGTATT
AAAACCTTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-155, - strand, RNAz p=0.672644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-155, - strand, RNAz p=0.672644

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-607, gnl|bosTau2|chr25 (30433215-30432609)
               

               
               6-607, gnl|Hg17|chr7 (75154412-75155475)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-607, gnl|bosTau2|chr25 (30433215-30432609)
               

               
               6-607, gnl|Hg17|chr7 (75154412-75155475)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hlv (0.278513)
               

               
               cst (0.140036)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               cst (0.140036)
               

               
               pla (0.133672)

	6-607, gnl\|bosTau2\|chr25 (30433215-30432609)
	6-607, gnl\|Hg17\|chr7 (75154412-75155475)