Non-Coding RNA Search

Ss1.1-Pig1-40M24.5

Sequence:


               
               ACTTTTTAATACTTGTGTGACCATGTTCACCCAGTTCTCTTCTATCTGTACTTTTGTCCC
TGTACTGTAACTGCCAATCTGTCTAAGCTGGAATCTGTGGCAACTGTTACCCTGTATTGT
ATTTACCAAGTGTCTGGATGGCTGGAGAAGTACTTGAACAAGTTACTTTTCATTGTCTTG
CTGGATTTTTAAAAATAGAAAGCCTCTGTAAAGTACTGTTTCATGTAGTTTGCTGAAAGA
GTCCTTCAGTATTTTTCTAGCTCCTTACAGGGTTGCTGAAGACATGAAATGAAATGCAAA
GGGCTTTGCAAACAGGATATGAGGAAGTCACTTGTGTGTCATGATGGCATTTGAAGGAGA
ACTGGGAAAGATCAATGTTTCAAGTGAAATTGGTTCAATGTCATCCAACCAAAAAGCATG
AAAACATCCCTGGGGCTTTTGAAGGCTTAATTTTGCAAAGGAAGAAGCACTGTCTTGACC
TTGCAATTTCATCTGATGCAAATTTGATGCAGTCATCTCTTAGAACATGAAATAGAGTCT
GACCTTAAAAGGACCAGCGCAAAAGCAGCTGTCAGCACTAAAGCTTGAACTAAAATGTGC
ATTGCACCAGGAAGTCTCTTCCATAGATGCTGGCTGGCCTTACAGAGCCATTTCTAGCCT
AAGACATCAGAAGAAAACTCATCAAAGGGCCTGAGGAAACCTGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTTAATACTTGTGTGACCATGTTCACCCAGTTCTCTTCTATCTGTACTTTTGTCCC
TGTACTGTAACTGCCAATCTGTCTAAGCTGGAATCTGTGGCAACTGTTACCCTGTATTGT
ATTTACCAAGTGTCTGGATGGCTGGAGAAGTACTTGAACAAGTTACTTTTCATTGTCTTG
CTGGATTTTTAAAAATAGAAAGCCTCTGTAAAGTACTGTTTCATGTAGTTTGCTGAAAGA
GTCCTTCAGTATTTTTCTAGCTCCTTACAGGGTTGCTGAAGACATGAAATGAAATGCAAA
GGGCTTTGCAAACAGGATATGAGGAAGTCACTTGTGTGTCATGATGGCATTTGAAGGAGA
ACTGGGAAAGATCAATGTTTCAAGTGAAATTGGTTCAATGTCATCCAACCAAAAAGCATG
AAAACATCCCTGGGGCTTTTGAAGGCTTAATTTTGCAAAGGAAGAAGCACTGTCTTGACC
TTGCAATTTCATCTGATGCAAATTTGATGCAGTCATCTCTTAGAACATGAAATAGAGTCT
GACCTTAAAAGGACCAGCGCAAAAGCAGCTGTCAGCACTAAAGCTTGAACTAAAATGTGC
ATTGCACCAGGAAGTCTCTTCCATAGATGCTGGCTGGCCTTACAGAGCCATTTCTAGCCT
AAGACATCAGAAGAAAACTCATCAAAGGGCCTGAGGAAACCTGGCAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-706, gnl|bosTau2|chr22 (32663828-32663091)
               

               
               1-706, gnl|Hg17|chr3 (56738253-56737547)
               

               
               1-706, gnl|Mm7|chr14 (24834830-24835665)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-706, gnl|bosTau2|chr22 (32663828-32663091)
               

               
               1-706, gnl|Hg17|chr3 (56738253-56737547)
               

               
               1-706, gnl|Mm7|chr14 (24834830-24835665)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

	1-706, gnl\|bosTau2\|chr22 (32663828-32663091)
	1-706, gnl\|Hg17\|chr3 (56738253-56737547)
	1-706, gnl\|Mm7\|chr14 (24834830-24835665)

	fty (0.17584)
	liv (0.146284)
	nca (0.136874)
	pla (0.133672)
	ova (0.129132)