Non-Coding RNA Search

Ss1.1-Pig1-41A02.5

Sequence:


               
               CCTAGGAAGCGGTATTTTTGGAGTTAATGGAGTCAGAAGGACCCCCAGAGCCAGAGTGTT
CAGAAAAATCACTGTTTTTCTCACAGCACGAAGAACAGGAAGATGAAGAAGAAGAAGAAG
CCAAAGAAGAAGAAGAAAAAGAAGAAGCCAAAGAAGCAGAGGAAACTGCCACCATTAATC
CCCTCTTACAGCCTGCACTCACAGGGGATGTAGAAGGTCTGCAGGAGATATTTGAGGATC
CTGGGAACCCTCACCATGAACAGGCCATGCAGCTACTCTTGGAAGAAGACATGGTTGGGA
GAAATTTGTTATATGCAGCTTGCATGGCTGGGCAAAGTGATGTGATTAGAGCTTTGGCCA
AATACGGTGTGAATCTGAATGAAAAAACAACCAGAGGTTACACACTCTTACACTGTGCTG
CAGCTTGGGGTCGTTTGGAAACTTTGAAAACCCTGGTGGAATTGGATGTTGATATAGAAG
CTCTGAACTTCCGGGAAGAAAAAGCTCGAGATGTTGCTGCTCGGTATTCCCAGACTGAGT
GTGTTGAATTCTTGGACTGGGCAGATGCAAGGCTGGCACTGAAAAAATATATTGCGAAGG
TCTCTGCAACTGTTACAGACCCAGAAAAGGGCCCAGGGAAGCTTTTTAAGGAAGACAAGA
ATACCATCCTCAGTGCATGCCGTATAAAAAATGAGTGGTTGGAAACCCATTTGGAAGCTT
CCATTAATGAGCTTTTTGAGCAGAAACAGCAATTGGAAGATATTGTGACTCCTATCTTCA
CAAAAATGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGGAAGCGGTATTTTTGGAGTTAATGGAGTCAGAAGGACCCCCAGAGCCAGAGTGTT
CAGAAAAATCACTGTTTTTCTCACAGCACGAAGAACAGGAAGATGAAGAAGAAGAAGAAG
CCAAAGAAGAAGAAGAAAAAGAAGAAGCCAAAGAAGCAGAGGAAACTGCCACCATTAATC
CCCTCTTACAGCCTGCACTCACAGGGGATGTAGAAGGTCTGCAGGAGATATTTGAGGATC
CTGGGAACCCTCACCATGAACAGGCCATGCAGCTACTCTTGGAAGAAGACATGGTTGGGA
GAAATTTGTTATATGCAGCTTGCATGGCTGGGCAAAGTGATGTGATTAGAGCTTTGGCCA
AATACGGTGTGAATCTGAATGAAAAAACAACCAGAGGTTACACACTCTTACACTGTGCTG
CAGCTTGGGGTCGTTTGGAAACTTTGAAAACCCTGGTGGAATTGGATGTTGATATAGAAG
CTCTGAACTTCCGGGAAGAAAAAGCTCGAGATGTTGCTGCTCGGTATTCCCAGACTGAGT
GTGTTGAATTCTTGGACTGGGCAGATGCAAGGCTGGCACTGAAAAAATATATTGCGAAGG
TCTCTGCAACTGTTACAGACCCAGAAAAGGGCCCAGGGAAGCTTTTTAAGGAAGACAAGA
ATACCATCCTCAGTGCATGCCGTATAAAAAATGAGTGGTTGGAAACCCATTTGGAAGCTT
CCATTAATGAGCTTTTTGAGCAGAAACAGCAATTGGAAGATATTGTGACTCCTATCTTCA
CAAAAATGGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TZF3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TZF3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-356, - strand, RNAz p=0.642742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-356, - strand, RNAz p=0.642742

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               11-398, gnl|bosTau2|chr16 (41873236-41873608)
               

               
               11-398, gnl|Hg17|chr1 (170360230-170359885)
               

               
               11-398, gnl|Mm7|chr1 (161113326-161113681)
               


               
               658-792, gnl|bosTau2|chr16 (41765047-41764913)
               

               
               658-792, gnl|canFam2|chr7 (28519527-28519377)
               

               
               658-792, gnl|danRer3|chr2 (28652004-28651854)
               

               
               658-792, gnl|dasNov1|scaffold_136827 (4172-4322)
               

               
               658-792, gnl|echTel1|scaffold_320416 (45214-45364)
               

               
               658-792, gnl|hg17|chr1 (170325572-170325722)
               

               
               658-792, gnl|Hg17|chr1 (170325723-170325589)
               

               
               658-792, gnl|loxAfr1|scaffold_23994 (12602-12752)
               

               
               658-792, gnl|mm7|chr1 (161125780-161125631)
               

               
               658-792, gnl|Mm7|chr1 (161125628-161125762)
               

               
               658-792, gnl|oryCun1|scaffold_112134 (8685-8544)
               

               
               658-792, gnl|panTro1|chr1 (152695566-152695716)
               

               
               658-792, gnl|rheMac2|chr1 (203270639-203270789)
               

               
               658-792, gnl|rn3|chr13 (76751557-76751408)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-398, gnl|bosTau2|chr16 (41873236-41873608)
               

               
               11-398, gnl|Hg17|chr1 (170360230-170359885)
               

               
               11-398, gnl|Mm7|chr1 (161113326-161113681)
               


               
               658-792, gnl|bosTau2|chr16 (41765047-41764913)
               

               
               658-792, gnl|canFam2|chr7 (28519527-28519377)
               

               
               658-792, gnl|danRer3|chr2 (28652004-28651854)
               

               
               658-792, gnl|dasNov1|scaffold_136827 (4172-4322)
               

               
               658-792, gnl|echTel1|scaffold_320416 (45214-45364)
               

               
               658-792, gnl|hg17|chr1 (170325572-170325722)
               

               
               658-792, gnl|Hg17|chr1 (170325723-170325589)
               

               
               658-792, gnl|loxAfr1|scaffold_23994 (12602-12752)
               

               
               658-792, gnl|mm7|chr1 (161125780-161125631)
               

               
               658-792, gnl|Mm7|chr1 (161125628-161125762)
               

               
               658-792, gnl|oryCun1|scaffold_112134 (8685-8544)
               

               
               658-792, gnl|panTro1|chr1 (152695566-152695716)
               

               
               658-792, gnl|rheMac2|chr1 (203270639-203270789)
               

               
               658-792, gnl|rn3|chr13 (76751557-76751408)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	11-398, gnl\|bosTau2\|chr16 (41873236-41873608)
	11-398, gnl\|Hg17\|chr1 (170360230-170359885)
	11-398, gnl\|Mm7\|chr1 (161113326-161113681)

	658-792, gnl\|bosTau2\|chr16 (41765047-41764913)
	658-792, gnl\|canFam2\|chr7 (28519527-28519377)
	658-792, gnl\|danRer3\|chr2 (28652004-28651854)
	658-792, gnl\|dasNov1\|scaffold_136827 (4172-4322)
	658-792, gnl\|echTel1\|scaffold_320416 (45214-45364)
	658-792, gnl\|hg17\|chr1 (170325572-170325722)
	658-792, gnl\|Hg17\|chr1 (170325723-170325589)
	658-792, gnl\|loxAfr1\|scaffold_23994 (12602-12752)
	658-792, gnl\|mm7\|chr1 (161125780-161125631)
	658-792, gnl\|Mm7\|chr1 (161125628-161125762)
	658-792, gnl\|oryCun1\|scaffold_112134 (8685-8544)
	658-792, gnl\|panTro1\|chr1 (152695566-152695716)
	658-792, gnl\|rheMac2\|chr1 (203270639-203270789)
	658-792, gnl\|rn3\|chr13 (76751557-76751408)