Non-Coding RNA Search

Ss1.1-Pig1-41B16.5

Sequence:


               
               CCTGCAGCTTCAAGGAGTGGACACTGACCACCAGCCGGGCAGCAGGGACATCAGAGGTTT
GAAGGGCTGGCCTGCTGTCTGTTCTCACTTGGGACCAAGGCCAGCAAATAAAGAAAAAAC
TCAACAAGACAGACTTGGCCAAACTGTTGATATTCTACAAAGACCTGAACCAGAGATCCA
TCATGGAGAGCCCCGCCAATAGCATCGAGATGCTTCTGTCCAACATCGGGGGTCAGCTGG
GCCTGTGGATGAGCTGCTCCGTCGTCTGCGTCATTGAGATCATTGAGGTCTTCTTCATCG
ACTCCCTCTCCATCATTGCCCGCCACCAGTGGCACAAAGCCAAGGGGTGGTGGGCCCGGA
GACAGGCGCCCCCCTGCCCAGAGGCTCCCCCTAGCCCTCAGGGCCGGGACAACCCAGCCC
TCAACATAGACGATGACCTGCCCACTTTCACCTCTGCCTTGCGCCTGCCTCCAGCCCCGG
CGGCCCAGGTGCCCGGCACGCCGCCCCCCAGATACAACACCCTGCGCTTGGAGAGGGCTT
TCTCCAGCCAGCTCTCAGACACCCAGGTGCCCGCCGAGTCCTGAGGCAGGGGTGGGGAAG
AAAGATCGAGCCAGGACCACCAGCCATGGTCTGAGAACTTGGACCCTTGTCTCCCACACG
CAGAAGGGACCCTCTGCATCCTGCCTCTGGGGTTTTCAAAGACACTGGCTCCAAGTCTGC
TTTGAACAAGAAGATGGGGCCCGGGCATGTGCAGGGGGCTGTTGGACCCTGCCCAGCAAC
ATTCGAAGCCGCCCAGGACAAGATCAGTCCCGCGGCCCAAACACTCAGCATCTCTGCCAT
GCAGAGAGAGAGAGATGGGGCCAAGGAAACCGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCAGCTTCAAGGAGTGGACACTGACCACCAGCCGGGCAGCAGGGACATCAGAGGTTT
GAAGGGCTGGCCTGCTGTCTGTTCTCACTTGGGACCAAGGCCAGCAAATAAAGAAAAAAC
TCAACAAGACAGACTTGGCCAAACTGTTGATATTCTACAAAGACCTGAACCAGAGATCCA
TCATGGAGAGCCCCGCCAATAGCATCGAGATGCTTCTGTCCAACATCGGGGGTCAGCTGG
GCCTGTGGATGAGCTGCTCCGTCGTCTGCGTCATTGAGATCATTGAGGTCTTCTTCATCG
ACTCCCTCTCCATCATTGCCCGCCACCAGTGGCACAAAGCCAAGGGGTGGTGGGCCCGGA
GACAGGCGCCCCCCTGCCCAGAGGCTCCCCCTAGCCCTCAGGGCCGGGACAACCCAGCCC
TCAACATAGACGATGACCTGCCCACTTTCACCTCTGCCTTGCGCCTGCCTCCAGCCCCGG
CGGCCCAGGTGCCCGGCACGCCGCCCCCCAGATACAACACCCTGCGCTTGGAGAGGGCTT
TCTCCAGCCAGCTCTCAGACACCCAGGTGCCCGCCGAGTCCTGAGGCAGGGGTGGGGAAG
AAAGATCGAGCCAGGACCACCAGCCATGGTCTGAGAACTTGGACCCTTGTCTCCCACACG
CAGAAGGGACCCTCTGCATCCTGCCTCTGGGGTTTTCAAAGACACTGGCTCCAAGTCTGC
TTTGAACAAGAAGATGGGGCCCGGGCATGTGCAGGGGGCTGTTGGACCCTGCCCAGCAAC
ATTCGAAGCCGCCCAGGACAAGATCAGTCCCGCGGCCCAAACACTCAGCATCTCTGCCAT
GCAGAGAGAGAGAGATGGGGCCAAGGAAACCGAGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61812692|ref|XP_585300.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61812692|ref|XP_585300.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               243-402, + strand, RNAz p=0.957934

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-402, + strand, RNAz p=0.957934

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               204-876, gnl|bosTau2|chr12 (17381920-17382570)
               

               
               204-876, gnl|Hg17|chr16 (23133911-23134575)
               

               
               204-876, gnl|Mm7|chr7 (117689547-117690163)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               204-876, gnl|bosTau2|chr12 (17381920-17382570)
               

               
               204-876, gnl|Hg17|chr16 (23133911-23134575)
               

               
               204-876, gnl|Mm7|chr7 (117689547-117690163)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	204-876, gnl\|bosTau2\|chr12 (17381920-17382570)
	204-876, gnl\|Hg17\|chr16 (23133911-23134575)
	204-876, gnl\|Mm7\|chr7 (117689547-117690163)