Non-Coding RNA Search

Ss1.1-Pig1-41C17.5

Sequence:


               
               GTGGGAAGACACTTCCCTGGGGGTCCCGAACCTGGCTCTTGTCCTGCCTCTGACCCTTCC
CAAGTGCATGGCCTTCCCCCGCCCTGAGCCCGAGGTTCCGTCACTGGCAGAATGAGAATG
GCACCGCCCGCCCAGCCCACCTCGCAGGACCGCCCTGGAGACTTTCCTGGTAAAGGTTGC
CCAGGGACCTCACCTGCCACTCAGGGAAGAGACCACTGAGGGTGACCTTGTAGCCTTGGC
CGGGAGGCGGCATGCCCCCGACCTGAGAGCTCGCCCTGCTCTGGGAGTCCGCAAACCCAC
TCCCTCCCCTGCGTCCACGTGCTGCGCATCCCCCACTGAGGGGACCGCTCTGTGCCTCTT
CTATGAAATTCACCCCATGCCACCCCACTCCTTCCATGAGGAAAACCAACCATGAGCCAT
GACCTTGAAGATCCTGAAAGATGTGTCTGTGTGCAGCGTGCCAGGCTCTGCAGCAGGGAT
GTGGTCCTGGCCTCAGGGTCTCCTCCATGGCTGTGAAACACACCCAAGTGTGGGGCTCCT
GGGTCAGGCTGTAGAGACCAGAGAGGGGCGCCCCTGGCCCTCTGGAGGCAGGGCATGTGT
GCAAACAGCCTGCAGGAATCTGGTCCTTCAATATATTGTGCTGAATTTCTAGGTAGGAAG
GTAACATTTCACGTTCAAAGAGATCAAGTCACATGGTCGTCTCTCCAGCATCTTGAGTTC
GTCAGAGGGCAGGGTTTCTGTTGTTTAAGGGAAAGTTTAATGAAATTTCCACCATCACCA
AGAGATTACTGATGTCAGTGACAAGCGATTTGTTCTCTGTATTTTACTTTGTTTGGGTTT
TTAAATACAACTGCCCGCTGGTCAGGCCATGCCCCAGGCTCAGGTCTGGCCATCCTGACC
CCTGGGGCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGAAGACACTTCCCTGGGGGTCCCGAACCTGGCTCTTGTCCTGCCTCTGACCCTTCC
CAAGTGCATGGCCTTCCCCCGCCCTGAGCCCGAGGTTCCGTCACTGGCAGAATGAGAATG
GCACCGCCCGCCCAGCCCACCTCGCAGGACCGCCCTGGAGACTTTCCTGGTAAAGGTTGC
CCAGGGACCTCACCTGCCACTCAGGGAAGAGACCACTGAGGGTGACCTTGTAGCCTTGGC
CGGGAGGCGGCATGCCCCCGACCTGAGAGCTCGCCCTGCTCTGGGAGTCCGCAAACCCAC
TCCCTCCCCTGCGTCCACGTGCTGCGCATCCCCCACTGAGGGGACCGCTCTGTGCCTCTT
CTATGAAATTCACCCCATGCCACCCCACTCCTTCCATGAGGAAAACCAACCATGAGCCAT
GACCTTGAAGATCCTGAAAGATGTGTCTGTGTGCAGCGTGCCAGGCTCTGCAGCAGGGAT
GTGGTCCTGGCCTCAGGGTCTCCTCCATGGCTGTGAAACACACCCAAGTGTGGGGCTCCT
GGGTCAGGCTGTAGAGACCAGAGAGGGGCGCCCCTGGCCCTCTGGAGGCAGGGCATGTGT
GCAAACAGCCTGCAGGAATCTGGTCCTTCAATATATTGTGCTGAATTTCTAGGTAGGAAG
GTAACATTTCACGTTCAAAGAGATCAAGTCACATGGTCGTCTCTCCAGCATCTTGAGTTC
GTCAGAGGGCAGGGTTTCTGTTGTTTAAGGGAAAGTTTAATGAAATTTCCACCATCACCA
AGAGATTACTGATGTCAGTGACAAGCGATTTGTTCTCTGTATTTTACTTTGTTTGGGTTT
TTAAATACAACTGCCCGCTGGTCAGGCCATGCCCCAGGCTCAGGTCTGGCCATCCTGACC
CCTGGGGCCACC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               4-534, gnl|bosTau2|chr19 (47074576-47074028)
               

               
               4-534, gnl|canFam2|chr9 (4722621-4721679)
               

               
               4-534, gnl|hg17|chr17 (75523865-75524868)
               

               
               4-534, gnl|Hg17|chr17 (75525004-75524464)
               

               
               4-534, gnl|loxAfr1|scaffold_17535 (31025-32007)
               

               
               4-534, gnl|mm7|chr11 (119251934-119252823)
               

               
               4-534, gnl|oryCun1|scaffold_61226 (678-1496)
               

               
               4-534, gnl|panTro1|chr19 (79210404-79211411)
               

               
               4-534, gnl|rheMac2|chr16 (75381811-75382818)
               

               
               4-534, gnl|rn3|chrUn (51968270-51969166)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-534, gnl|bosTau2|chr19 (47074576-47074028)
               

               
               4-534, gnl|canFam2|chr9 (4722621-4721679)
               

               
               4-534, gnl|hg17|chr17 (75523865-75524868)
               

               
               4-534, gnl|Hg17|chr17 (75525004-75524464)
               

               
               4-534, gnl|loxAfr1|scaffold_17535 (31025-32007)
               

               
               4-534, gnl|mm7|chr11 (119251934-119252823)
               

               
               4-534, gnl|oryCun1|scaffold_61226 (678-1496)
               

               
               4-534, gnl|panTro1|chr19 (79210404-79211411)
               

               
               4-534, gnl|rheMac2|chr16 (75381811-75382818)
               

               
               4-534, gnl|rn3|chrUn (51968270-51969166)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               che (0.136314)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               che (0.136314)
               

               
               eru (0.120048)

	4-534, gnl\|bosTau2\|chr19 (47074576-47074028)
	4-534, gnl\|canFam2\|chr9 (4722621-4721679)
	4-534, gnl\|hg17\|chr17 (75523865-75524868)
	4-534, gnl\|Hg17\|chr17 (75525004-75524464)
	4-534, gnl\|loxAfr1\|scaffold_17535 (31025-32007)
	4-534, gnl\|mm7\|chr11 (119251934-119252823)
	4-534, gnl\|oryCun1\|scaffold_61226 (678-1496)
	4-534, gnl\|panTro1\|chr19 (79210404-79211411)
	4-534, gnl\|rheMac2\|chr16 (75381811-75382818)
	4-534, gnl\|rn3\|chrUn (51968270-51969166)