Non-Coding RNA Search

Ss1.1-Pig1-41F08.5

Sequence:


               
               GTAAATGCTGGCAACTGATCTGATTTAAATCAAGGGCAGCCTGACAGTGTCCTGGGTGGG
CTGAACGTGTGCTGAGTTCTCCACTTTGTTGCCTCTGGGCCATGTGGGGCGGGGCGGGGG
GGGGTCTTGAGATGGAGGCCAGCTGCCCTTGGCCCCCAGGTTCTAGAGAGTGTGTGAACG
CAGGCTTCCCATGGAATGTTCCAGAGCCCAGCCCTTGATCTGGTTCTTTCGTTTGCGGCT
GCAGGGCCGTGTTTATTCTGCAAACCCAAATTGGGGTCATGTGGCCTGAGATGATTATAT
GATACCCTCCAAGTGGAAGGGTTTGTTGAAATTTCTAGAATACTTTGATTTATGGGGATG
GGAAAATAACAGAATGCTGGAGAGCGTAGGGCTTGTGGTTGTCAGAAGACGCAGGGACAG
CCGTGTGCTGTGTGCCAGGCCCGGAGGGATGTCTCCTCAGCAGCCCCATGAGGCCGGCCT
TGGGCTCAGACCGCACGGGCTGGGCACCTTCGGTCTGGATCCCTCCCACCCCTTTGGGCT
GTGGGTGTGGTGGAGAGACAGACAGCTTGGTCCTGTGTAGGCTACCTGCTCGTTGACTCT
GGTCATGGCATCTTGGTGAGCTCCGGTCTCCAGCCCGGGTGTTTACTGAATCAGCGTGCG
CGGCACTGGCACCTGCCCCAGCGCCCGGCCAGGGGGTGGGTGGTCAGGGGGCACTGGTTC
CCCTTTTCACCTGAGATATGCACACAGCTAGAAGCCATCTGGGCTTGAAAAAAGTCTAAC
TCCTTGAACAAATAAGCCTTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAATGCTGGCAACTGATCTGATTTAAATCAAGGGCAGCCTGACAGTGTCCTGGGTGGG
CTGAACGTGTGCTGAGTTCTCCACTTTGTTGCCTCTGGGCCATGTGGGGCGGGGCGGGGG
GGGGTCTTGAGATGGAGGCCAGCTGCCCTTGGCCCCCAGGTTCTAGAGAGTGTGTGAACG
CAGGCTTCCCATGGAATGTTCCAGAGCCCAGCCCTTGATCTGGTTCTTTCGTTTGCGGCT
GCAGGGCCGTGTTTATTCTGCAAACCCAAATTGGGGTCATGTGGCCTGAGATGATTATAT
GATACCCTCCAAGTGGAAGGGTTTGTTGAAATTTCTAGAATACTTTGATTTATGGGGATG
GGAAAATAACAGAATGCTGGAGAGCGTAGGGCTTGTGGTTGTCAGAAGACGCAGGGACAG
CCGTGTGCTGTGTGCCAGGCCCGGAGGGATGTCTCCTCAGCAGCCCCATGAGGCCGGCCT
TGGGCTCAGACCGCACGGGCTGGGCACCTTCGGTCTGGATCCCTCCCACCCCTTTGGGCT
GTGGGTGTGGTGGAGAGACAGACAGCTTGGTCCTGTGTAGGCTACCTGCTCGTTGACTCT
GGTCATGGCATCTTGGTGAGCTCCGGTCTCCAGCCCGGGTGTTTACTGAATCAGCGTGCG
CGGCACTGGCACCTGCCCCAGCGCCCGGCCAGGGGGTGGGTGGTCAGGGGGCACTGGTTC
CCCTTTTCACCTGAGATATGCACACAGCTAGAAGCCATCTGGGCTTGAAAAAAGTCTAAC
TCCTTGAACAAATAAGCCTTATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               146-329, + strand, RNAz p=0.962177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-329, + strand, RNAz p=0.962177

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK097339, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK097339, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               146-444, gnl|bosTau2|chr5 (67037245-67036937)
               

               
               146-444, gnl|Hg17|chr22 (36663453-36663756)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-444, gnl|bosTau2|chr5 (67037245-67036937)
               

               
               146-444, gnl|Hg17|chr22 (36663453-36663756)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	146-444, gnl\|bosTau2\|chr5 (67037245-67036937)
	146-444, gnl\|Hg17\|chr22 (36663453-36663756)