Non-Coding RNA Search

Ss1.1-Pig1-41J09.5

Sequence:


               
               CACATGCACACTCCATCTCCTGCTCACCGTCCGCCTCTAATCTGACCTGCCGCCTAGCTG
GTCCTCTGTCTCTAAAGCTGAATGTCAAACAGTGCCAAATGCTGGGGCAAGGAGTGAAGA
CCCCTCTGTCCCACACTAGCTGCCAGTGTCCCCTAAATGCCCCTGACCCCACCAGGTGCT
CATTGTAACCATTTCTCTCTAGTGTCAGGCCGCCCCCATGGGACCACATGCCACTGCCTG
CACCCCTCAGCAGAGGAACGCTCACCAAACATCGCCCTTTGCCTTAGGGGTGACTTGATC
ACTCCTAGCTGGGTCATCCCACCCCTAATCTGGCCCTTACACACTCAGGCCTGTGCCCAC
TCCCTGTCTCCTTCCCACTCACACACACACACTCCCTGGCCAAACTGCTCCTCCCTGCTA
AACACACACTTGCCCATACATACACACATATACACACTCTGTGCACACGCAGAGGCTGGG
GCCTGGGCACATCTCTTCACACCATTCATTCTGGTCATTTCCCCCAAAGGTATCTTGGCC
TGGGGGCCACTGGGGGACTGAGGGCAGGGGAATGTTGCCACGGCGCTCAGATGGACTGGG
AGGAGGGGGGAGGGTGATGCATTAATTAATGGCTCCGTTAATTAATGTCACGTTGCTTGT
CGCTTTCTCAGTGTGTGTCCATGCCCGCTGCTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATGCACACTCCATCTCCTGCTCACCGTCCGCCTCTAATCTGACCTGCCGCCTAGCTG
GTCCTCTGTCTCTAAAGCTGAATGTCAAACAGTGCCAAATGCTGGGGCAAGGAGTGAAGA
CCCCTCTGTCCCACACTAGCTGCCAGTGTCCCCTAAATGCCCCTGACCCCACCAGGTGCT
CATTGTAACCATTTCTCTCTAGTGTCAGGCCGCCCCCATGGGACCACATGCCACTGCCTG
CACCCCTCAGCAGAGGAACGCTCACCAAACATCGCCCTTTGCCTTAGGGGTGACTTGATC
ACTCCTAGCTGGGTCATCCCACCCCTAATCTGGCCCTTACACACTCAGGCCTGTGCCCAC
TCCCTGTCTCCTTCCCACTCACACACACACACTCCCTGGCCAAACTGCTCCTCCCTGCTA
AACACACACTTGCCCATACATACACACATATACACACTCTGTGCACACGCAGAGGCTGGG
GCCTGGGCACATCTCTTCACACCATTCATTCTGGTCATTTCCCCCAAAGGTATCTTGGCC
TGGGGGCCACTGGGGGACTGAGGGCAGGGGAATGTTGCCACGGCGCTCAGATGGACTGGG
AGGAGGGGGGAGGGTGATGCATTAATTAATGGCTCCGTTAATTAATGTCACGTTGCTTGT
CGCTTTCTCAGTGTGTGTCCATGCCCGCTGCTGGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-378, - strand, RNAz p=0.992938
               

               
               516-669, - strand, RNAz p=0.603515

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-378, - strand, RNAz p=0.992938
               

               
               516-669, - strand, RNAz p=0.603515

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               641-726, + strand, RNAmicro p=0.998384

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               641-726, + strand, RNAmicro p=0.998384

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-678, gnl|bosTau2|chr22 (38637670-38637014)
               

               
               1-678, gnl|Hg17|chr3 (50376362-50375699)
               

               
               1-678, gnl|Mm7|chr9 (107257586-107258302)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-678, gnl|bosTau2|chr22 (38637670-38637014)
               

               
               1-678, gnl|Hg17|chr3 (50376362-50375699)
               

               
               1-678, gnl|Mm7|chr9 (107257586-107258302)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	238-378, - strand, RNAz p=0.992938
	516-669, - strand, RNAz p=0.603515

	1-678, gnl\|bosTau2\|chr22 (38637670-38637014)
	1-678, gnl\|Hg17\|chr3 (50376362-50375699)
	1-678, gnl\|Mm7\|chr9 (107257586-107258302)