Non-Coding RNA Search

Ss1.1-Pig1-42G18.5

Sequence:


               
               GGTTGGGTTCTTGATCGTTTTTCCGTACTCCGACTTACTGCTACACTCTTCTCTGCATCT
GGAGATTCCTCCGTGGTCCTTCTGCTCTCATCACAGTGGTCCTCCATCCAGCATCCTCTC
CAGGCCATCCCTGTGGCGGCCACGTCTACATGTCAGTCTTGTTTCATCCTTGGAACGGCC
TTTGAGCATTACGTGTAAAACCCTTGGTGTATAGTTCCCACAGAGAGATGACTGTATCAA
GGACCAGAAACCAGAGGAAGGGGCCCTTTAAAAAGATCCCATCCTAATGAATTCCAGCAT
TCCTGAGATCCTGCGGATAATTCAGCTGGACCTAGACCTAAAGTACAAGACCAACATCCG
GGAATTGTTTGAGGAGTTTGACAACTTCCTGCCAGGTGCTGTCATTGGCATAGCAAGGGA
GATGCAGCCCGTGTACAGGCACACGTTCTGGCAGTTCCGCCACGAGAACCCCAAGACCCG
GGTCGGGGGCCCTCCCCCCGACGGGCTCCCCGGCTTCAACAGCGGGGTGATGCTGCTCAA
CCTGGAGGCCATGCGCCAGTCCCCGCTGTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCA
GCAGCTGGCCGCCAAGTACCGCTTCCGGGGTCACCTCGGGGACCAGGACTTCTTCACCAT
GATCGGGCTGTCATTTCCTGATTTCTGCTTTTAATGAGTTCTCCTGTAAGCGGACTGCAA
ACATGGTCCATTCTGTATCATCTAGCCAGGGTCCTCGGGGGAAAATGTTGTTGAACTTTC
ATCTTATTTCAATGGCATTTACTTTTTTTTTTTCTCTCCAGGAGTGGGAATAATAATCTT
TGAGAATGCAGTGGTTTATACTGTTGGCTCTCTGATCAGTTTTCTACTACCTGAAGGTTC
TGAATCAAGAGTGTGGTCACTGTCATTCAACGTCTCCCTCCCCACAGGATTAAGCTGGGG
TGCTCACAGCGGGTCCCCCAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGGGTTCTTGATCGTTTTTCCGTACTCCGACTTACTGCTACACTCTTCTCTGCATCT
GGAGATTCCTCCGTGGTCCTTCTGCTCTCATCACAGTGGTCCTCCATCCAGCATCCTCTC
CAGGCCATCCCTGTGGCGGCCACGTCTACATGTCAGTCTTGTTTCATCCTTGGAACGGCC
TTTGAGCATTACGTGTAAAACCCTTGGTGTATAGTTCCCACAGAGAGATGACTGTATCAA
GGACCAGAAACCAGAGGAAGGGGCCCTTTAAAAAGATCCCATCCTAATGAATTCCAGCAT
TCCTGAGATCCTGCGGATAATTCAGCTGGACCTAGACCTAAAGTACAAGACCAACATCCG
GGAATTGTTTGAGGAGTTTGACAACTTCCTGCCAGGTGCTGTCATTGGCATAGCAAGGGA
GATGCAGCCCGTGTACAGGCACACGTTCTGGCAGTTCCGCCACGAGAACCCCAAGACCCG
GGTCGGGGGCCCTCCCCCCGACGGGCTCCCCGGCTTCAACAGCGGGGTGATGCTGCTCAA
CCTGGAGGCCATGCGCCAGTCCCCGCTGTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCA
GCAGCTGGCCGCCAAGTACCGCTTCCGGGGTCACCTCGGGGACCAGGACTTCTTCACCAT
GATCGGGCTGTCATTTCCTGATTTCTGCTTTTAATGAGTTCTCCTGTAAGCGGACTGCAA
ACATGGTCCATTCTGTATCATCTAGCCAGGGTCCTCGGGGGAAAATGTTGTTGAACTTTC
ATCTTATTTCAATGGCATTTACTTTTTTTTTTTCTCTCCAGGAGTGGGAATAATAATCTT
TGAGAATGCAGTGGTTTATACTGTTGGCTCTCTGATCAGTTTTCTACTACCTGAAGGTTC
TGAATCAAGAGTGTGGTCACTGTCATTCAACGTCTCCCTCCCCACAGGATTAAGCTGGGG
TGCTCACAGCGGGTCCCCCAGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869020|ref|XP_613187.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869020|ref|XP_613187.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               437-556, - strand, RNAz p=0.737808

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-556, - strand, RNAz p=0.737808

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               70-305, gnl|bosTau2|chr1 (44223534-44223302)
               

               
               70-305, gnl|canFam2|chr33 (33841633-33841281)
               

               
               70-305, gnl|dasNov1|scaffold_1132 (37471-37835)
               

               
               70-305, gnl|echTel1|scaffold_116709 (397-777)
               

               
               70-305, gnl|hg17|chr3 (196360719-196361120)
               

               
               70-305, gnl|Hg17|chr3 (196361090-196360867)
               

               
               70-305, gnl|loxAfr1|scaffold_3169 (13203-12796)
               

               
               70-305, gnl|mm7|chr16 (30684820-30685258)
               

               
               70-305, gnl|Mm7|chr16 (30685203-30684963)
               

               
               70-305, gnl|oryCun1|scaffold_211248 (7045-6653)
               

               
               70-305, gnl|panTro1|chr2 (200493285-200493686)
               

               
               70-305, gnl|rheMac2|chr2 (187372652-187373053)
               


               
               437-686, gnl|bosTau2|chr1 (44148299-44148050)
               

               
               437-686, gnl|Hg17|chr3 (196272139-196271890)
               

               
               437-686, gnl|Mm7|chr16 (30631766-30631517)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-305, gnl|bosTau2|chr1 (44223534-44223302)
               

               
               70-305, gnl|canFam2|chr33 (33841633-33841281)
               

               
               70-305, gnl|dasNov1|scaffold_1132 (37471-37835)
               

               
               70-305, gnl|echTel1|scaffold_116709 (397-777)
               

               
               70-305, gnl|hg17|chr3 (196360719-196361120)
               

               
               70-305, gnl|Hg17|chr3 (196361090-196360867)
               

               
               70-305, gnl|loxAfr1|scaffold_3169 (13203-12796)
               

               
               70-305, gnl|mm7|chr16 (30684820-30685258)
               

               
               70-305, gnl|Mm7|chr16 (30685203-30684963)
               

               
               70-305, gnl|oryCun1|scaffold_211248 (7045-6653)
               

               
               70-305, gnl|panTro1|chr2 (200493285-200493686)
               

               
               70-305, gnl|rheMac2|chr2 (187372652-187373053)
               


               
               437-686, gnl|bosTau2|chr1 (44148299-44148050)
               

               
               437-686, gnl|Hg17|chr3 (196272139-196271890)
               

               
               437-686, gnl|Mm7|chr16 (30631766-30631517)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	70-305, gnl\|bosTau2\|chr1 (44223534-44223302)
	70-305, gnl\|canFam2\|chr33 (33841633-33841281)
	70-305, gnl\|dasNov1\|scaffold_1132 (37471-37835)
	70-305, gnl\|echTel1\|scaffold_116709 (397-777)
	70-305, gnl\|hg17\|chr3 (196360719-196361120)
	70-305, gnl\|Hg17\|chr3 (196361090-196360867)
	70-305, gnl\|loxAfr1\|scaffold_3169 (13203-12796)
	70-305, gnl\|mm7\|chr16 (30684820-30685258)
	70-305, gnl\|Mm7\|chr16 (30685203-30684963)
	70-305, gnl\|oryCun1\|scaffold_211248 (7045-6653)
	70-305, gnl\|panTro1\|chr2 (200493285-200493686)
	70-305, gnl\|rheMac2\|chr2 (187372652-187373053)

	437-686, gnl\|bosTau2\|chr1 (44148299-44148050)
	437-686, gnl\|Hg17\|chr3 (196272139-196271890)
	437-686, gnl\|Mm7\|chr16 (30631766-30631517)