Non-Coding RNA Search

Ss1.1-Pig1-43G03.5

Sequence:


               
               GTGGTCCTTGGGACTGCACCCCACCATGACTCGCTGTGTGGCCATGCGTAGCTGGGGAAG
CCCGCTGAGGGAATGGCTTGCACAGATGTTGGAAACCGACAGCTCCCATTCTGGGGACAG
GATTTCTCTTTTTCTTTTTAGGGCCACACCTCATTCTGAAGTCTTCTCTAAGTAGAACTC
CTTTCCCTAGGAGAGGGCCTCATTCCTGCCCTCCTCCATCTGGAAGCCTTGGTACGGAAG
ACAGGACCTTGATCCAAACTTTGATACCAGCAATTGGCAGGATTGGGGGAAGAACTGGGC
TTGTAAGATGCATAAGCTTTTCAGACCAGCAGTAATTAATGCAGTCTTAAACTCACTATA
GCAGAGCTGGCTTTCCTAGGCAGTTGCTGATGCGGTCTTTCCACAGGTGGAGAGTGGCTG
GGAGGGCTAGTGAGGAGGTAGAGTGCTTAATAGCCCACGTGCTTGGGTTACCATGGAAAC
GGGAGTGTTCGAGGCCCCAGCAGATGCTGAAGAGCCATTGAGCACTCCCCCTGATGTGTT
TGGGGACCAGCAGAACGGGTTGGGAAAAACACTCCTGTCCCAGGGTCCTTTCTTCATAGC
AAGGGTCGCCTTTGCACTATCCCTGAGCTTGCTCGACAAAAGAAACAGGTTTCTTAACTG
TTCTACCATTCGTTATTTTTCATTCTTATTTGGCTGTATCTTATCTATATATATGTAACT
GTAAAGAAACATTATATGCATTGTTTTCCTTTTATATTCATGTAATATTCTGAAATTAAA
TTTCTTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCCTTGGGACTGCACCCCACCATGACTCGCTGTGTGGCCATGCGTAGCTGGGGAAG
CCCGCTGAGGGAATGGCTTGCACAGATGTTGGAAACCGACAGCTCCCATTCTGGGGACAG
GATTTCTCTTTTTCTTTTTAGGGCCACACCTCATTCTGAAGTCTTCTCTAAGTAGAACTC
CTTTCCCTAGGAGAGGGCCTCATTCCTGCCCTCCTCCATCTGGAAGCCTTGGTACGGAAG
ACAGGACCTTGATCCAAACTTTGATACCAGCAATTGGCAGGATTGGGGGAAGAACTGGGC
TTGTAAGATGCATAAGCTTTTCAGACCAGCAGTAATTAATGCAGTCTTAAACTCACTATA
GCAGAGCTGGCTTTCCTAGGCAGTTGCTGATGCGGTCTTTCCACAGGTGGAGAGTGGCTG
GGAGGGCTAGTGAGGAGGTAGAGTGCTTAATAGCCCACGTGCTTGGGTTACCATGGAAAC
GGGAGTGTTCGAGGCCCCAGCAGATGCTGAAGAGCCATTGAGCACTCCCCCTGATGTGTT
TGGGGACCAGCAGAACGGGTTGGGAAAAACACTCCTGTCCCAGGGTCCTTTCTTCATAGC
AAGGGTCGCCTTTGCACTATCCCTGAGCTTGCTCGACAAAAGAAACAGGTTTCTTAACTG
TTCTACCATTCGTTATTTTTCATTCTTATTTGGCTGTATCTTATCTATATATATGTAACT
GTAAAGAAACATTATATGCATTGTTTTCCTTTTATATTCATGTAATATTCTGAAATTAAA
TTTCTTTTGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-606, + strand, RNAz p=0.993443

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-606, + strand, RNAz p=0.993443

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032900, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032900, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-792, gnl|bosTau2|chr26 (8675469-8676114)
               

               
               150-792, gnl|Hg17|chr10 (98972570-98971930)
               

               
               150-792, gnl|Mm7|chr19 (41661048-41660431)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-792, gnl|bosTau2|chr26 (8675469-8676114)
               

               
               150-792, gnl|Hg17|chr10 (98972570-98971930)
               

               
               150-792, gnl|Mm7|chr19 (41661048-41660431)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               spc (0.113366)

	150-792, gnl\|bosTau2\|chr26 (8675469-8676114)
	150-792, gnl\|Hg17\|chr10 (98972570-98971930)
	150-792, gnl\|Mm7\|chr19 (41661048-41660431)