Non-Coding RNA Search

Ss1.1-Pig1-44K18.5

Sequence:


               
               CTCCCTGACCCTTTCTTTTTTAAACACATTTTCACAAGTTTTTGAGACACTGGATTTCTT
TAATTAAAAAAAAAAAAAAAAGCAAACATTATTTATACAAGGTTGGTTGCTTTCATGCTG
TTACTCTGTACCCTACAGTAGTCTCCATGAGAATCTGGATGTAATTTCTTGCTGCTTGGA
ATTACTTTGCAGTGATTGCTTGGTTGCTGTCCAAGTACTGCCATTTGGTCTGAGCCTGGA
GATAACATAGACCTAATTCTCCCACCTCTGGGATCAGGATGGGGAAGTGTGAAATTTCCC
AATTAGAGGATTACAAGGTACCATCCGTCACTTGCTGGCATAGGAGTGACTATAGCTGGA
ACTGGCCCTAAATTGTAGTCTTAAGAGATTGGTCCATTTGGAGCCAAAATGCCTAATCCA
GAAGTCCAGTCCGTTGGAAAGGGAAATTGAAATTGACCTCCTGTGCTACCAGAGGTCCAG
AAAAGGGAAGTCTGTTTACCTTGCAGTGGGATCTCCTTAATGGCTTTCTTTTCCCACTTG
CAGTAAAAGCTGGCAAAGCTTTTCTCACTCCTAAGATGTTTCCCTTTACCAGTATTTCTA
AACATGTTGCACTTTCTTTCACAGGCATGCCATTTTGACTTCCAACCCCCCAAAATCTTC
TGGAAAGGGAATGGAAGCAGAAGTGGGACATCTAGGGCTCTGCCATCTTCTGCTCTGGGT
GCAGGATGCCACCGCACCTGTCCCTCCTTTCAGCTCAGGGAAGTGTCTTCTTGCCCACAG
TTTCTGTGGGGGGAGGTTCTTAATCCTCTGATGCTTCCACCTTTCTCTTTAGGCCATGTA
CCCAGAAACCTGGCCTGATCTTTCTGGAACGGTTGGCCTGGGCCACTGGAGAGTACTGTG
GCTCCACTGGACACAAGAGGATAGAATCAATAGGCAGGGGCCTTTTTTAGCCTTTAGAGA
AGAACATGAAATTATTTCATCTTTGGACTTTTAAATAATATTGGAATTTTTTTTTCTTTT
TAAACAGGGAAAATAATGTTATGAAAGCTTTTTTTTTGTTGTTATTATTTGTTTGCATCC
CTCCCCATACCCTGGTGTTTTAAAAATGCAGGAAAAAAAATACACTTTTTTGTACAAAAA
CACATAAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTGACCCTTTCTTTTTTAAACACATTTTCACAAGTTTTTGAGACACTGGATTTCTT
TAATTAAAAAAAAAAAAAAAAGCAAACATTATTTATACAAGGTTGGTTGCTTTCATGCTG
TTACTCTGTACCCTACAGTAGTCTCCATGAGAATCTGGATGTAATTTCTTGCTGCTTGGA
ATTACTTTGCAGTGATTGCTTGGTTGCTGTCCAAGTACTGCCATTTGGTCTGAGCCTGGA
GATAACATAGACCTAATTCTCCCACCTCTGGGATCAGGATGGGGAAGTGTGAAATTTCCC
AATTAGAGGATTACAAGGTACCATCCGTCACTTGCTGGCATAGGAGTGACTATAGCTGGA
ACTGGCCCTAAATTGTAGTCTTAAGAGATTGGTCCATTTGGAGCCAAAATGCCTAATCCA
GAAGTCCAGTCCGTTGGAAAGGGAAATTGAAATTGACCTCCTGTGCTACCAGAGGTCCAG
AAAAGGGAAGTCTGTTTACCTTGCAGTGGGATCTCCTTAATGGCTTTCTTTTCCCACTTG
CAGTAAAAGCTGGCAAAGCTTTTCTCACTCCTAAGATGTTTCCCTTTACCAGTATTTCTA
AACATGTTGCACTTTCTTTCACAGGCATGCCATTTTGACTTCCAACCCCCCAAAATCTTC
TGGAAAGGGAATGGAAGCAGAAGTGGGACATCTAGGGCTCTGCCATCTTCTGCTCTGGGT
GCAGGATGCCACCGCACCTGTCCCTCCTTTCAGCTCAGGGAAGTGTCTTCTTGCCCACAG
TTTCTGTGGGGGGAGGTTCTTAATCCTCTGATGCTTCCACCTTTCTCTTTAGGCCATGTA
CCCAGAAACCTGGCCTGATCTTTCTGGAACGGTTGGCCTGGGCCACTGGAGAGTACTGTG
GCTCCACTGGACACAAGAGGATAGAATCAATAGGCAGGGGCCTTTTTTAGCCTTTAGAGA
AGAACATGAAATTATTTCATCTTTGGACTTTTAAATAATATTGGAATTTTTTTTTCTTTT
TAAACAGGGAAAATAATGTTATGAAAGCTTTTTTTTTGTTGTTATTATTTGTTTGCATCC
CTCCCCATACCCTGGTGTTTTAAAAATGCAGGAAAAAAAATACACTTTTTTGTACAAAAA
CACATAAAAGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               475-594, - strand, RNAz p=0.65921
               

               
               633-751, + strand, RNAz p=0.944783

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-594, - strand, RNAz p=0.65921
               

               
               633-751, + strand, RNAz p=0.944783

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BX640639, -
               

               
               5' of NM_002355, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX640639, -
               

               
               5' of NM_002355, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-1152, gnl|bosTau2|chr5 (59533326-59534431)
               

               
               9-1152, gnl|Hg17|chr12 (8985366-8984244)
               

               
               9-1152, gnl|Mm7|chr6 (122342816-122343764)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1152, gnl|bosTau2|chr5 (59533326-59534431)
               

               
               9-1152, gnl|Hg17|chr12 (8985366-8984244)
               

               
               9-1152, gnl|Mm7|chr6 (122342816-122343764)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cki (0.330469)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	475-594, - strand, RNAz p=0.65921
	633-751, + strand, RNAz p=0.944783

	9-1152, gnl\|bosTau2\|chr5 (59533326-59534431)
	9-1152, gnl\|Hg17\|chr12 (8985366-8984244)
	9-1152, gnl\|Mm7\|chr6 (122342816-122343764)

	cki (0.330469)
	cte (0.29274)
	csk (0.281492)
	nca (0.273748)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	nje (0.16592)
	mga (0.160205)
	spl (0.143184)
	hyp (0.142837)
	ssp (0.13552)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)