Non-Coding RNA Search

Ss1.1-Pig1-44L05.5

Sequence:


               
               GGCTCCGCAGGCTCTCCCGCCCCAGGGAGAAATGTTGCTGAAGTGCTGCTGAAAGGGCCA
GAGATGCAAGGATTTGGGACACGTTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTT
CATTATTAATAAAGAAGAAGCAGGAGCTTAGGATGTATTAACGCCAACTCATTAGTATAC
TAACCGGACAATATTCTGCAACAATTCTACATTGTAGAACTGCATTGGCATAAAATGAAA
TAATTTCATATTATACCCAGCTTATAATATGATTCGATGGAGGAAAATTTGATAAGCATG
AGGGAAGACCATTCTTTTCATGTTCGTTACAGAATGGAAGCTTCTTGCCTAGAACTGGCC
TTGGAAGGGGAGCGTCTGTGCAAATCAGGAGACTGCCGTGCTGGTGTGTCATTCTTTGAA
GCTGCAGTTCAAGTTGGAACTGAAGACCTAAAAACCCTTAGTGCTATTTACAGCCAGCTG
GGCAATGCTTATTTCTATTTGCATGATTATGCCAAAGCATTAGAATACCATCATCATGAT
TTAACTCTTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCCGCAGGCTCTCCCGCCCCAGGGAGAAATGTTGCTGAAGTGCTGCTGAAAGGGCCA
GAGATGCAAGGATTTGGGACACGTTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTT
CATTATTAATAAAGAAGAAGCAGGAGCTTAGGATGTATTAACGCCAACTCATTAGTATAC
TAACCGGACAATATTCTGCAACAATTCTACATTGTAGAACTGCATTGGCATAAAATGAAA
TAATTTCATATTATACCCAGCTTATAATATGATTCGATGGAGGAAAATTTGATAAGCATG
AGGGAAGACCATTCTTTTCATGTTCGTTACAGAATGGAAGCTTCTTGCCTAGAACTGGCC
TTGGAAGGGGAGCGTCTGTGCAAATCAGGAGACTGCCGTGCTGGTGTGTCATTCTTTGAA
GCTGCAGTTCAAGTTGGAACTGAAGACCTAAAAACCCTTAGTGCTATTTACAGCCAGCTG
GGCAATGCTTATTTCTATTTGCATGATTATGCCAAAGCATTAGAATACCATCATCATGAT
TTAACTCTTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55587640|ref|XP_513611.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55587640|ref|XP_513611.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-352, gnl|bosTau2|chr3 (31414988-31414663)
               

               
               28-352, gnl|Hg17|chr1 (109139937-109140263)
               

               
               28-352, gnl|Mm7|chr3 (108529870-108529544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-352, gnl|bosTau2|chr3 (31414988-31414663)
               

               
               28-352, gnl|Hg17|chr1 (109139937-109140263)
               

               
               28-352, gnl|Mm7|chr3 (108529870-108529544)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               nco (0.161734)

	28-352, gnl\|bosTau2\|chr3 (31414988-31414663)
	28-352, gnl\|Hg17\|chr1 (109139937-109140263)
	28-352, gnl\|Mm7\|chr3 (108529870-108529544)