Non-Coding RNA Search

Ss1.1-Pig1-44M08.5

Sequence:


               
               CTTTCTTTCCCGGAAGTGCAGAGGGGCGGCGTTGCCATGGCGGCGACCCTGGGGCAAGTG
CTGGCGCTGGTGCTGGTGGCCGCTCTGTGGGGTGGCACACAGCCGCTGCTGAAGCGGGCC
TCCTCCCGCCTGCAGCAGGTTCATGAGAGGACCTGGGTCCAGCAGTTGCTGCAGGAAATG
AAGACCCTCTTCTTGAATACTGAGTACCTGATGCCCTTTTTCCTCAACCAGTGTGGCTCC
CTTCTCTACTACCTCACCTTGGCATCAACAGATCTGACCCTCGCGGTACCCATCAGTAAC
TCTCTGGCCATCGTCTTTACACTGATTGTTGGGAAGGCCCTTGGAGAAGATATTGGTGGA
AAACGAGCATTCACAGGCATGGTGCTCACCGTGGCAGGAATTACTCTCTGCATCACAAGC
TCAGTGAACAAGACTCAGGGGCAACCGTCTACGCTTTGAGTGGGCCAAGGCCACCCTCCA
GCTCTGCTGTCCAGGGAGCCCCTGGGCCAGGAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTTTCCCGGAAGTGCAGAGGGGCGGCGTTGCCATGGCGGCGACCCTGGGGCAAGTG
CTGGCGCTGGTGCTGGTGGCCGCTCTGTGGGGTGGCACACAGCCGCTGCTGAAGCGGGCC
TCCTCCCGCCTGCAGCAGGTTCATGAGAGGACCTGGGTCCAGCAGTTGCTGCAGGAAATG
AAGACCCTCTTCTTGAATACTGAGTACCTGATGCCCTTTTTCCTCAACCAGTGTGGCTCC
CTTCTCTACTACCTCACCTTGGCATCAACAGATCTGACCCTCGCGGTACCCATCAGTAAC
TCTCTGGCCATCGTCTTTACACTGATTGTTGGGAAGGCCCTTGGAGAAGATATTGGTGGA
AAACGAGCATTCACAGGCATGGTGCTCACCGTGGCAGGAATTACTCTCTGCATCACAAGC
TCAGTGAACAAGACTCAGGGGCAACCGTCTACGCTTTGAGTGGGCCAAGGCCACCCTCCA
GCTCTGCTGTCCAGGGAGCCCCTGGGCCAGGAGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BSR2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BSR2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               52-170, - strand, RNAz p=0.906212
               

               
               98-204, - strand, RNAz p=0.654957

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-170, - strand, RNAz p=0.906212
               

               
               98-204, - strand, RNAz p=0.654957

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC001256, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC001256, -

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               52-204, gnl|bosTau2|chr2 (73512672-73512520)
               

               
               52-204, gnl|canFam2|chr2 (71878690-71878519)
               

               
               52-204, gnl|danRer3|chr13 (34408706-34408540)
               

               
               52-204, gnl|dasNov1|scaffold_3246 (19979-19833)
               

               
               52-204, gnl|echTel1|scaffold_321073 (4145-4316)
               

               
               52-204, gnl|fr1|chrUn (55277837-55278006)
               

               
               52-204, gnl|galGal2|chr23 (4594357-4594196)
               

               
               52-204, gnl|hg17|chr1 (32356554-32356726)
               

               
               52-204, gnl|Hg17|chr1 (32356713-32356561)
               

               
               52-204, gnl|mm7|chr4 (129045790-129045618)
               

               
               52-204, gnl|Mm7|chr4 (129045629-129045781)
               

               
               52-204, gnl|monDom2|scaffold_43 (7560974-7560803)
               

               
               52-204, gnl|oryCun1|scaffold_195127 (26101-26237)
               

               
               52-204, gnl|panTro1|chr1 (33115925-33116097)
               

               
               52-204, gnl|rheMac2|chr1 (34978566-34978738)
               

               
               52-204, gnl|rn3|chr9 (1625208-1625357)
               

               
               52-204, gnl|tetNig1|chr10 (6866986-6867148)
               

               
               52-204, gnl|xenTro1|scaffold_523 (673972-674144)
               


               
               365-515, gnl|bosTau2|chr2 (73508369-73508218)
               

               
               365-515, gnl|Hg17|chr1 (32351641-32351490)
               

               
               365-515, gnl|Mm7|chr4 (129052103-129052253)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-204, gnl|bosTau2|chr2 (73512672-73512520)
               

               
               52-204, gnl|canFam2|chr2 (71878690-71878519)
               

               
               52-204, gnl|danRer3|chr13 (34408706-34408540)
               

               
               52-204, gnl|dasNov1|scaffold_3246 (19979-19833)
               

               
               52-204, gnl|echTel1|scaffold_321073 (4145-4316)
               

               
               52-204, gnl|fr1|chrUn (55277837-55278006)
               

               
               52-204, gnl|galGal2|chr23 (4594357-4594196)
               

               
               52-204, gnl|hg17|chr1 (32356554-32356726)
               

               
               52-204, gnl|Hg17|chr1 (32356713-32356561)
               

               
               52-204, gnl|mm7|chr4 (129045790-129045618)
               

               
               52-204, gnl|Mm7|chr4 (129045629-129045781)
               

               
               52-204, gnl|monDom2|scaffold_43 (7560974-7560803)
               

               
               52-204, gnl|oryCun1|scaffold_195127 (26101-26237)
               

               
               52-204, gnl|panTro1|chr1 (33115925-33116097)
               

               
               52-204, gnl|rheMac2|chr1 (34978566-34978738)
               

               
               52-204, gnl|rn3|chr9 (1625208-1625357)
               

               
               52-204, gnl|tetNig1|chr10 (6866986-6867148)
               

               
               52-204, gnl|xenTro1|scaffold_523 (673972-674144)
               


               
               365-515, gnl|bosTau2|chr2 (73508369-73508218)
               

               
               365-515, gnl|Hg17|chr1 (32351641-32351490)
               

               
               365-515, gnl|Mm7|chr4 (129052103-129052253)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	52-170, - strand, RNAz p=0.906212
	98-204, - strand, RNAz p=0.654957

	52-204, gnl\|bosTau2\|chr2 (73512672-73512520)
	52-204, gnl\|canFam2\|chr2 (71878690-71878519)
	52-204, gnl\|danRer3\|chr13 (34408706-34408540)
	52-204, gnl\|dasNov1\|scaffold_3246 (19979-19833)
	52-204, gnl\|echTel1\|scaffold_321073 (4145-4316)
	52-204, gnl\|fr1\|chrUn (55277837-55278006)
	52-204, gnl\|galGal2\|chr23 (4594357-4594196)
	52-204, gnl\|hg17\|chr1 (32356554-32356726)
	52-204, gnl\|Hg17\|chr1 (32356713-32356561)
	52-204, gnl\|mm7\|chr4 (129045790-129045618)
	52-204, gnl\|Mm7\|chr4 (129045629-129045781)
	52-204, gnl\|monDom2\|scaffold_43 (7560974-7560803)
	52-204, gnl\|oryCun1\|scaffold_195127 (26101-26237)
	52-204, gnl\|panTro1\|chr1 (33115925-33116097)
	52-204, gnl\|rheMac2\|chr1 (34978566-34978738)
	52-204, gnl\|rn3\|chr9 (1625208-1625357)
	52-204, gnl\|tetNig1\|chr10 (6866986-6867148)
	52-204, gnl\|xenTro1\|scaffold_523 (673972-674144)

	365-515, gnl\|bosTau2\|chr2 (73508369-73508218)
	365-515, gnl\|Hg17\|chr1 (32351641-32351490)
	365-515, gnl\|Mm7\|chr4 (129052103-129052253)