Non-Coding RNA Search

Ss1.1-Pig1-44M09.5

Sequence:


               
               GAGATAGACCTGTTAGTACTACATTTTTAAGGCATTTTATATTTGATGGTGCCGTACTTT
TAATAATAAAACTGAAGTTTTTTAGTGGCAATACTGAATTATTTTTTAAACCAGAAAGAT
AATCCATATTGATTACTTAATACAAAAAAAAAAAGGAAAAATGCCAAAAAAAATTTATTT
GAAGCAACATAACTAAGCTTTGGGCTCAAGCAGTCAAACTATATAGGTTTGCAGTTACTT
AATAACCCCACACTCAGAATTAACAAAAATTTCTGGATGAGTTTTACAATATTTACTATA
CCTGACTGATACTTGTTTTACAACTCGAGAAAAGGTAGGCAGTCTTGTTTCTAGCAAGTT
AATGCAAATCCTAATTACACTCTGAGTAATTAGAAGCCTTGATCACATTCTAAAATTGTC
TTTATAAAGGGAGTTCCTCTTGTGGCACAGAGGAAATGAATCTGACTAGTATCCATGCGG
CTGCTGGTTCGATCCCTGGCCTTGCTGTGAGTTGTGTGGTATAGGTTGCAGATGTGGTTC
CAATCTGGAGTTGCTGTGGTGTAGGCTGGCAGCTATGGCTCCAATTAGGTCTCTAGCCTG
GGAGCTTCCATATGCCTCGGGTGCGGTCCTAAAAAAAATAAAAAAAATTGTCTTTATGGA
AAACTCTTTATCATGAAGTCATTATACATTTGATCAAGTCTGAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATAGACCTGTTAGTACTACATTTTTAAGGCATTTTATATTTGATGGTGCCGTACTTT
TAATAATAAAACTGAAGTTTTTTAGTGGCAATACTGAATTATTTTTTAAACCAGAAAGAT
AATCCATATTGATTACTTAATACAAAAAAAAAAAGGAAAAATGCCAAAAAAAATTTATTT
GAAGCAACATAACTAAGCTTTGGGCTCAAGCAGTCAAACTATATAGGTTTGCAGTTACTT
AATAACCCCACACTCAGAATTAACAAAAATTTCTGGATGAGTTTTACAATATTTACTATA
CCTGACTGATACTTGTTTTACAACTCGAGAAAAGGTAGGCAGTCTTGTTTCTAGCAAGTT
AATGCAAATCCTAATTACACTCTGAGTAATTAGAAGCCTTGATCACATTCTAAAATTGTC
TTTATAAAGGGAGTTCCTCTTGTGGCACAGAGGAAATGAATCTGACTAGTATCCATGCGG
CTGCTGGTTCGATCCCTGGCCTTGCTGTGAGTTGTGTGGTATAGGTTGCAGATGTGGTTC
CAATCTGGAGTTGCTGTGGTGTAGGCTGGCAGCTATGGCTCCAATTAGGTCTCTAGCCTG
GGAGCTTCCATATGCCTCGGGTGCGGTCCTAAAAAAAATAAAAAAAATTGTCTTTATGGA
AAACTCTTTATCATGAAGTCATTATACATTTGATCAAGTCTGAAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33338008|gb|AAQ13626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33338008|gb|AAQ13626.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-426, gnl|bosTau2|chr7 (48597106-48597553)
               

               
               2-426, gnl|canFam2|chr4 (53798900-53798357)
               

               
               2-426, gnl|dasNov1|scaffold_61033 (3577-2998)
               

               
               2-426, gnl|echTel1|scaffold_308717 (27160-27663)
               

               
               2-426, gnl|hg17|chr5 (159435858-159436427)
               

               
               2-426, gnl|Hg17|chr5 (159436598-159436141)
               

               
               2-426, gnl|loxAfr1|scaffold_8506 (80038-79465)
               

               
               2-426, gnl|mm7|chr11 (43678792-43678271)
               

               
               2-426, gnl|Mm7|chr11 (43678081-43678560)
               

               
               2-426, gnl|monDom2|scaffold_6 (44795513-44794910)
               

               
               2-426, gnl|oryCun1|scaffold_94041 (4240-3692)
               

               
               2-426, gnl|panTro1|chr4 (166607957-166608526)
               

               
               2-426, gnl|rheMac2|chr6 (156463477-156464051)
               

               
               2-426, gnl|rn3|chr10 (28829598-28829080)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-426, gnl|bosTau2|chr7 (48597106-48597553)
               

               
               2-426, gnl|canFam2|chr4 (53798900-53798357)
               

               
               2-426, gnl|dasNov1|scaffold_61033 (3577-2998)
               

               
               2-426, gnl|echTel1|scaffold_308717 (27160-27663)
               

               
               2-426, gnl|hg17|chr5 (159435858-159436427)
               

               
               2-426, gnl|Hg17|chr5 (159436598-159436141)
               

               
               2-426, gnl|loxAfr1|scaffold_8506 (80038-79465)
               

               
               2-426, gnl|mm7|chr11 (43678792-43678271)
               

               
               2-426, gnl|Mm7|chr11 (43678081-43678560)
               

               
               2-426, gnl|monDom2|scaffold_6 (44795513-44794910)
               

               
               2-426, gnl|oryCun1|scaffold_94041 (4240-3692)
               

               
               2-426, gnl|panTro1|chr4 (166607957-166608526)
               

               
               2-426, gnl|rheMac2|chr6 (156463477-156464051)
               

               
               2-426, gnl|rn3|chr10 (28829598-28829080)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	2-426, gnl\|bosTau2\|chr7 (48597106-48597553)
	2-426, gnl\|canFam2\|chr4 (53798900-53798357)
	2-426, gnl\|dasNov1\|scaffold_61033 (3577-2998)
	2-426, gnl\|echTel1\|scaffold_308717 (27160-27663)
	2-426, gnl\|hg17\|chr5 (159435858-159436427)
	2-426, gnl\|Hg17\|chr5 (159436598-159436141)
	2-426, gnl\|loxAfr1\|scaffold_8506 (80038-79465)
	2-426, gnl\|mm7\|chr11 (43678792-43678271)
	2-426, gnl\|Mm7\|chr11 (43678081-43678560)
	2-426, gnl\|monDom2\|scaffold_6 (44795513-44794910)
	2-426, gnl\|oryCun1\|scaffold_94041 (4240-3692)
	2-426, gnl\|panTro1\|chr4 (166607957-166608526)
	2-426, gnl\|rheMac2\|chr6 (156463477-156464051)
	2-426, gnl\|rn3\|chr10 (28829598-28829080)