Non-Coding RNA Search

Ss1.1-Pig1-44M16.5

Sequence:


               
               GGCAGGCTGAGAAATAAATAAAGAAAGGTCCTTCTCAAGCCAGACCCCGATTGTCTCATC
GCGGAGGGGAGCCCCGTCTCCGTTTGGAGGTGTGGGTAGAAGTGCTCGCTTGTGGTAGTT
TATTATTCCCGGCCCGACCCCAGGGTCCAGGAAGAGAGCGTGCCGTGTAACGGTCTGGGA
GTCTTGGCCAAGCAAGGCTCACACCCTTGGAAATGGGACTTTCCACCTCCCCAGCCTTTC
TCAGACAGCTGGTCCTCTTCCAAACACCTTTTTCAGCCAGGGTGGGATGCTGTTTTCGTT
CTACTCCCCCCTGAGAAGCCATTCCTGTGTCTGCCAAACTCCTGGGGTCCGGCCTGTTAC
CTCCCAATGGAGGGTTGTTTTTTTCGGGGGGAGCGGTCCCCGTCTGGGGGGCCCCCCCAG
CCAGTACTCCAGGTCTCCCTGTCCCCCACCCCCTGCCATTTTGATAGTATAATCTATTTT
TAAACAGGGCTTTTCAATAGGGGAGAAGGAGGCAACGCTTCCTATTATCTGAGATGGGGT
GGGTGGGAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGCTGAGAAATAAATAAAGAAAGGTCCTTCTCAAGCCAGACCCCGATTGTCTCATC
GCGGAGGGGAGCCCCGTCTCCGTTTGGAGGTGTGGGTAGAAGTGCTCGCTTGTGGTAGTT
TATTATTCCCGGCCCGACCCCAGGGTCCAGGAAGAGAGCGTGCCGTGTAACGGTCTGGGA
GTCTTGGCCAAGCAAGGCTCACACCCTTGGAAATGGGACTTTCCACCTCCCCAGCCTTTC
TCAGACAGCTGGTCCTCTTCCAAACACCTTTTTCAGCCAGGGTGGGATGCTGTTTTCGTT
CTACTCCCCCCTGAGAAGCCATTCCTGTGTCTGCCAAACTCCTGGGGTCCGGCCTGTTAC
CTCCCAATGGAGGGTTGTTTTTTTCGGGGGGAGCGGTCCCCGTCTGGGGGGCCCCCCCAG
CCAGTACTCCAGGTCTCCCTGTCCCCCACCCCCTGCCATTTTGATAGTATAATCTATTTT
TAAACAGGGCTTTTCAATAGGGGAGAAGGAGGCAACGCTTCCTATTATCTGAGATGGGGT
GGGTGGGAAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               187-552, + strand, RNAz p=0.997795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-552, + strand, RNAz p=0.997795

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               388-374, 187348 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE685213.1|), 
blast E-value=3e-26, identity=98.53% 
               

               
               387-374, 268320 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF602946.1|), 
blast E-value=6e-40, identity=87.89% 
               

               
               388-374, 969676 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847089.1|), 
blast E-value=6e-40, identity=87.89% 
               

               
               388-374, BovGen_07106 normal cattle brain Bos taurus cDNA clone 
(gb|CO878781.1|), blast E-value=6e-40, identity=87.89% 
               

               
               388-376, LIB3733-059-A1-K1-F3 LIB3733 Canis familiaris cDNA clone 
(gb|DN371096.1|), blast E-value=1e-22, identity=95.71% 
               

               
               388-374, 1450157 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY453829.1|), 
blast E-value=3e-26, identity=98.53%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               388-374, 187348 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE685213.1|), 
blast E-value=3e-26, identity=98.53% 
               

               
               387-374, 268320 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF602946.1|), 
blast E-value=6e-40, identity=87.89% 
               

               
               388-374, 969676 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK847089.1|), 
blast E-value=6e-40, identity=87.89% 
               

               
               388-374, BovGen_07106 normal cattle brain Bos taurus cDNA clone 
(gb|CO878781.1|), blast E-value=6e-40, identity=87.89% 
               

               
               388-376, LIB3733-059-A1-K1-F3 LIB3733 Canis familiaris cDNA clone 
(gb|DN371096.1|), blast E-value=1e-22, identity=95.71% 
               

               
               388-374, 1450157 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY453829.1|), 
blast E-value=3e-26, identity=98.53%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC056150, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC056150, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-552, gnl|bosTau2|chrX (25649201-25648724)
               

               
               67-552, gnl|Hg17|chrX (47252049-47251576)
               

               
               67-552, gnl|Mm7|chrX (19368185-19367701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-552, gnl|bosTau2|chrX (25649201-25648724)
               

               
               67-552, gnl|Hg17|chrX (47252049-47251576)
               

               
               67-552, gnl|Mm7|chrX (19368185-19367701)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	388-374, 187348 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE685213.1\|), blast E-value=3e-26, identity=98.53%
	387-374, 268320 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF602946.1\|), blast E-value=6e-40, identity=87.89%
	388-374, 969676 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK847089.1\|), blast E-value=6e-40, identity=87.89%
	388-374, BovGen_07106 normal cattle brain Bos taurus cDNA clone (gb\|CO878781.1\|), blast E-value=6e-40, identity=87.89%
	388-376, LIB3733-059-A1-K1-F3 LIB3733 Canis familiaris cDNA clone (gb\|DN371096.1\|), blast E-value=1e-22, identity=95.71%
	388-374, 1450157 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY453829.1\|), blast E-value=3e-26, identity=98.53%

	67-552, gnl\|bosTau2\|chrX (25649201-25648724)
	67-552, gnl\|Hg17\|chrX (47252049-47251576)
	67-552, gnl\|Mm7\|chrX (19368185-19367701)