Non-Coding RNA Search

Ss1.1-Pig1-44N02.5

Sequence:


               
               CTGAGGCGGCTCCTGGGTGCCGATGCCTGCGGCCTCGGATCTCGATGCGGCGCAGAATGG
AGACTGATGAGCAGGGCTGCGTGGCCGCGTGGTGGGATATGGTGGCCAGGAACCTGCGAT
CTTTTCCACACTCCTGTTCAACACTCGGAAGAAAAATTGCCACTCTACATGACAGCTTTA
CAAGTAAATCATTGAAAGAACATATTTTCCCTCCTCTTATGGACATGCTGATTTTTTTTA
ACTTTTTCAAAGCACCATTTCTTGTGGATTTAAAGAAACCGGAGTTAAAGATTCCTCACA
CAGCAAATTTCTACATCCAAGCTGAACCTGGGGTGATACTGGGAATCTGGTGAGTGCACT
GACTGGACACTGGGGGGCTTGGTGCACGTGGATTTCATGTTACAAGAGCAAAGATGAGCA
GTGCTGTATTACCTGCCTGTGGAGAGGCCCGTGTTCCTTGGAGAAAGCTGTTCTGCATGC
CTATCCTTCGTCTTTATGTATGACCTGCTTGGATTTGCCTCTCAGGAGTCTTACTTTGGA
GGGTAGAGTCTTTCAGGTGCCTTGGGTCTTTCTTCAGGCCTGAGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGGCGGCTCCTGGGTGCCGATGCCTGCGGCCTCGGATCTCGATGCGGCGCAGAATGG
AGACTGATGAGCAGGGCTGCGTGGCCGCGTGGTGGGATATGGTGGCCAGGAACCTGCGAT
CTTTTCCACACTCCTGTTCAACACTCGGAAGAAAAATTGCCACTCTACATGACAGCTTTA
CAAGTAAATCATTGAAAGAACATATTTTCCCTCCTCTTATGGACATGCTGATTTTTTTTA
ACTTTTTCAAAGCACCATTTCTTGTGGATTTAAAGAAACCGGAGTTAAAGATTCCTCACA
CAGCAAATTTCTACATCCAAGCTGAACCTGGGGTGATACTGGGAATCTGGTGAGTGCACT
GACTGGACACTGGGGGGCTTGGTGCACGTGGATTTCATGTTACAAGAGCAAAGATGAGCA
GTGCTGTATTACCTGCCTGTGGAGAGGCCCGTGTTCCTTGGAGAAAGCTGTTCTGCATGC
CTATCCTTCGTCTTTATGTATGACCTGCTTGGATTTGCCTCTCAGGAGTCTTACTTTGGA
GGGTAGAGTCTTTCAGGTGCCTTGGGTCTTTCTTCAGGCCTGAGGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28521542|ref|XP_286429.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28521542|ref|XP_286429.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               118-246, gnl|bosTau2|chr10 (29299733-29299861)
               

               
               118-246, gnl|Hg17|chr14 (50414419-50414547)
               

               
               118-246, gnl|Mm7|chr12 (68100333-68100461)
               


               
               247-542, gnl|bosTau2|chr10 (29300947-29301241)
               

               
               247-542, gnl|Hg17|chr14 (50415213-50415749)
               

               
               247-542, gnl|Mm7|chr12 (68102443-68102924)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-246, gnl|bosTau2|chr10 (29299733-29299861)
               

               
               118-246, gnl|Hg17|chr14 (50414419-50414547)
               

               
               118-246, gnl|Mm7|chr12 (68100333-68100461)
               


               
               247-542, gnl|bosTau2|chr10 (29300947-29301241)
               

               
               247-542, gnl|Hg17|chr14 (50415213-50415749)
               

               
               247-542, gnl|Mm7|chr12 (68102443-68102924)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cmu (0.186393)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fat (0.147427)

	118-246, gnl\|bosTau2\|chr10 (29299733-29299861)
	118-246, gnl\|Hg17\|chr14 (50414419-50414547)
	118-246, gnl\|Mm7\|chr12 (68100333-68100461)

	247-542, gnl\|bosTau2\|chr10 (29300947-29301241)
	247-542, gnl\|Hg17\|chr14 (50415213-50415749)
	247-542, gnl\|Mm7\|chr12 (68102443-68102924)