Ss1.1-Pig1-44O10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGATGGCTGTGTAGGGACAGGGCACTGCTGTTGATGCTGGGGCCATGCCCGGCACCTTG GCCAGGTTGTCCCGCCGCCCAGGCCACCAGGTACCCCCAGCCGTGCTGCTCTGAGTAGTG CAGAGGGAAGCCGTCCCAAGTCAGCGCCATGAGCTTCGGCGTGATGCGCATCTGGAGACT GAGGAGACTGGGGCCCGGCGTCCATGCGGGGTCATCCAGCCGGGGGCAGAGCTTCCGATA CCACCCTGGGTGTCCAGGAAGGTGCTGGGGCCGCTTGGGCAGGAGCTCCGTGGTCCCCCT CAGCTGCTCCAAGCGGGTGCGGGCCATGACATCTTGCTGAAACTCCTCCTCCTCGCTGGG GGGGCCGGGGTCTTCCTGTTCCTTGGGATCACCCGGGGCCCCAGCCCCCTCGATGGGCAA CTTGCTGGCTGTGGCCGGCTCCTTCCTCTTCAGCTTCTTTGCCTTCTTTTGCTTAAACTC CTGCAGGTCCCACTCCAGGTCCCAGAGCCAGGGATCTTCCTTGTACCTCTCTCCCGAGAG CAGCTGGCAGGCATCGTTGGCCAGGTCCATCAGCGACTTCTTCATTTCCCGCTGGAGCTC CTCGTAGGTGCTCTGGGCCTCCGCCAGGTAACGCTCCCAGTTTTGGTTGACAGGCAGGTA GGAGACGCCCATCTCCAACATGCCAGCCAGAGTCACTGGGTGGGGACACCTTTCCAAGAA GAGTGGCAGCTGCTGCTGGAAAACCTCAAAGGTGGCCCACACATCCTGGGCACAGTACCG CATCAGGTCCTGGAAGTTCTCACGGATGTCCTTCATGTTGCCCTTGACAAACAGCTCGCG AGGCTCCTTCTCCAGGGGAGGCCCCCCCACATAGAGGTGGTGTACATCTGCCAGATTATT GACACTGCTGATGTCCAGCCAGTCCCAGGATGAGATCACTGGGCCGTTGGCTTTGCTCTG GGACTTGTGGCCCCGCTGTGGGGGGGTCCGGGCCTTGTGCTTGCCCTGCCTGGCTGCCAT CCACAGACTGCGCTGGAAGCTGCTCAGCCCGGAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGATGGCTGTGTAGGGACAGGGCACTGCTGTTGATGCTGGGGCCATGCCCGGCACCTTG GCCAGGTTGTCCCGCCGCCCAGGCCACCAGGTACCCCCAGCCGTGCTGCTCTGAGTAGTG CAGAGGGAAGCCGTCCCAAGTCAGCGCCATGAGCTTCGGCGTGATGCGCATCTGGAGACT GAGGAGACTGGGGCCCGGCGTCCATGCGGGGTCATCCAGCCGGGGGCAGAGCTTCCGATA CCACCCTGGGTGTCCAGGAAGGTGCTGGGGCCGCTTGGGCAGGAGCTCCGTGGTCCCCCT CAGCTGCTCCAAGCGGGTGCGGGCCATGACATCTTGCTGAAACTCCTCCTCCTCGCTGGG GGGGCCGGGGTCTTCCTGTTCCTTGGGATCACCCGGGGCCCCAGCCCCCTCGATGGGCAA CTTGCTGGCTGTGGCCGGCTCCTTCCTCTTCAGCTTCTTTGCCTTCTTTTGCTTAAACTC CTGCAGGTCCCACTCCAGGTCCCAGAGCCAGGGATCTTCCTTGTACCTCTCTCCCGAGAG CAGCTGGCAGGCATCGTTGGCCAGGTCCATCAGCGACTTCTTCATTTCCCGCTGGAGCTC CTCGTAGGTGCTCTGGGCCTCCGCCAGGTAACGCTCCCAGTTTTGGTTGACAGGCAGGTA GGAGACGCCCATCTCCAACATGCCAGCCAGAGTCACTGGGTGGGGACACCTTTCCAAGAA GAGTGGCAGCTGCTGCTGGAAAACCTCAAAGGTGGCCCACACATCCTGGGCACAGTACCG CATCAGGTCCTGGAAGTTCTCACGGATGTCCTTCATGTTGCCCTTGACAAACAGCTCGCG AGGCTCCTTCTCCAGGGGAGGCCCCCCCACATAGAGGTGGTGTACATCTGCCAGATTATT GACACTGCTGATGTCCAGCCAGTCCCAGGATGAGATCACTGGGCCGTTGGCTTTGCTCTG GGACTTGTGGCCCCGCTGTGGGGGGGTCCGGGCCTTGTGCTTGCCCTGCCTGGCTGCCAT CCACAGACTGCGCTGGAAGCTGCTCAGCCCGGAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 86-205, + strand, RNAz p=0.523665 | |
| 524-712, - strand, RNAz p=0.695843 | |
| 595-712, - strand, RNAz p=0.924175 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 86-205, + strand, RNAz p=0.523665 | |
| 524-712, - strand, RNAz p=0.695843 | |
| 595-712, - strand, RNAz p=0.924175 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 10-245, gnl|bosTau2|chr21 (15883203-15882966) | |
| 10-245, gnl|Hg17|chr15 (87669685-87669922) | |
| 10-245, gnl|Mm7|chr7 (75326465-75326702) | |
| 524-712, gnl|bosTau2|chr21 (15881440-15881252) | |
| 524-712, gnl|canFam2|chr3 (55228358-55228499) | |
| 524-712, gnl|danRer3|chr9 (1525567-1525426) | |
| 524-712, gnl|dasNov1|scaffold_32641 (4776-4922) | |
| 524-712, gnl|echTel1|scaffold_162496 (5340-5199) | |
| 524-712, gnl|fr1|chrUn (166046639-166046780) | |
| 524-712, gnl|galGal2|chrUn (158022724-158022585) | |
| 524-712, gnl|hg17|chr15 (87671398-87671539) | |
| 524-712, gnl|Hg17|chr15 (87671399-87671587) | |
| 524-712, gnl|mm7|chr7 (75327976-75328117) | |
| 524-712, gnl|Mm7|chr7 (75327977-75328165) | |
| 524-712, gnl|monDom2|scaffold_45 (11222314-11222173) | |
| 524-712, gnl|panTro1|chr16 (88542826-88542967) | |
| 524-712, gnl|rheMac2|chr7 (68956305-68956446) | |
| 524-712, gnl|rn3|chr1 (135285316-135285457) | |
| 524-712, gnl|tetNig1|chr13 (5013616-5013757) | |
| 524-712, gnl|xenTro1|scaffold_130 (950837-950976) | |
| 755-945, gnl|bosTau2|chr21 (15880253-15880062) | |
| 755-945, gnl|Hg17|chr15 (87672886-87673076) | |
| 755-945, gnl|Mm7|chr7 (75328541-75328705) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-245, gnl|bosTau2|chr21 (15883203-15882966) | |
| 10-245, gnl|Hg17|chr15 (87669685-87669922) | |
| 10-245, gnl|Mm7|chr7 (75326465-75326702) | |
| 524-712, gnl|bosTau2|chr21 (15881440-15881252) | |
| 524-712, gnl|canFam2|chr3 (55228358-55228499) | |
| 524-712, gnl|danRer3|chr9 (1525567-1525426) | |
| 524-712, gnl|dasNov1|scaffold_32641 (4776-4922) | |
| 524-712, gnl|echTel1|scaffold_162496 (5340-5199) | |
| 524-712, gnl|fr1|chrUn (166046639-166046780) | |
| 524-712, gnl|galGal2|chrUn (158022724-158022585) | |
| 524-712, gnl|hg17|chr15 (87671398-87671539) | |
| 524-712, gnl|Hg17|chr15 (87671399-87671587) | |
| 524-712, gnl|mm7|chr7 (75327976-75328117) | |
| 524-712, gnl|Mm7|chr7 (75327977-75328165) | |
| 524-712, gnl|monDom2|scaffold_45 (11222314-11222173) | |
| 524-712, gnl|panTro1|chr16 (88542826-88542967) | |
| 524-712, gnl|rheMac2|chr7 (68956305-68956446) | |
| 524-712, gnl|rn3|chr1 (135285316-135285457) | |
| 524-712, gnl|tetNig1|chr13 (5013616-5013757) | |
| 524-712, gnl|xenTro1|scaffold_130 (950837-950976) | |
| 755-945, gnl|bosTau2|chr21 (15880253-15880062) | |
| 755-945, gnl|Hg17|chr15 (87672886-87673076) | |
| 755-945, gnl|Mm7|chr7 (75328541-75328705) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |