Non-Coding RNA Search

Ss1.1-Pig1-45F24.5

Sequence:


               
               TCCTGGAAGCGGCCAAGGGGGAAGCGGCGAGTCAACATGGAGCTTTCAGCGGTGGGGGAG
CGGGTGTTCGCGGCCGAAGCCCTCCTGAAGAGGCGCATACGGAAAGGACGCATGGAATAC
CTTGTGAAATGGAAGGGCTGGTCGCAGAAGTACAGCACATGGGAACCTGAAGAAAACATC
CTGGACGCTCGCCTGCTTGCCGCCTTTGAGGAAAGGGAACGAGAGATGGAGCTCTACGGC
CCCAAAAAGCGAGGACCCAAACCCAAAACCTTCCTGCTCAAGGCCCAGGCCAAGGCAAAG
GCCAAAACTTATGAGTTCCGAAGTGACTCAGCCAGAGGCATTCGGATCCCCTACCCCGGC
CGCTCGCCTCAGGAACTGGCCTCTACTTCCCGGGCCCGTGAGGGCCTTCGGAACATGGGT
CTTTCCCCGCCAGGGAGCAGCAGCAGCACCAGCAGCACCTGTCGAGTGGAGCCCCCTCGG
GACCGTGAGCGGGACCGTGAGCGTGAGCGGGAGAGGGAGAGGGAACGAGAGCGTGAGCGC
GATCGTGATCGGGGCACCAGCCGTGCAGACGACAAACCCAGCTCACCAAGCTCCAAGAAA
CGAGGTCCCAAGCCCCGGAAGGAACTCCTGGACCCTTCGCAGAGGCCCTTGGGAGAACCC
AGTGATGGCCTCGGAGATTACCTCAAGGGCAGGAAGCTGGACGATGCTGCTTCCGGGGCA
GGAAAGTTCCCAGCTGGCCACAGCGTGATCCAGCTGGCTCGAAGGCAGGACTCGGACCTG
GCCCAGTGTGGTGTGGCCAGCCCCAGCCCAGCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGGAAGCGGCCAAGGGGGAAGCGGCGAGTCAACATGGAGCTTTCAGCGGTGGGGGAG
CGGGTGTTCGCGGCCGAAGCCCTCCTGAAGAGGCGCATACGGAAAGGACGCATGGAATAC
CTTGTGAAATGGAAGGGCTGGTCGCAGAAGTACAGCACATGGGAACCTGAAGAAAACATC
CTGGACGCTCGCCTGCTTGCCGCCTTTGAGGAAAGGGAACGAGAGATGGAGCTCTACGGC
CCCAAAAAGCGAGGACCCAAACCCAAAACCTTCCTGCTCAAGGCCCAGGCCAAGGCAAAG
GCCAAAACTTATGAGTTCCGAAGTGACTCAGCCAGAGGCATTCGGATCCCCTACCCCGGC
CGCTCGCCTCAGGAACTGGCCTCTACTTCCCGGGCCCGTGAGGGCCTTCGGAACATGGGT
CTTTCCCCGCCAGGGAGCAGCAGCAGCACCAGCAGCACCTGTCGAGTGGAGCCCCCTCGG
GACCGTGAGCGGGACCGTGAGCGTGAGCGGGAGAGGGAGAGGGAACGAGAGCGTGAGCGC
GATCGTGATCGGGGCACCAGCCGTGCAGACGACAAACCCAGCTCACCAAGCTCCAAGAAA
CGAGGTCCCAAGCCCCGGAAGGAACTCCTGGACCCTTCGCAGAGGCCCTTGGGAGAACCC
AGTGATGGCCTCGGAGATTACCTCAAGGGCAGGAAGCTGGACGATGCTGCTTCCGGGGCA
GGAAAGTTCCCAGCTGGCCACAGCGTGATCCAGCTGGCTCGAAGGCAGGACTCGGACCTG
GCCCAGTGTGGTGTGGCCAGCCCCAGCCCAGCTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q52T65_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52T65_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               272-391, - strand, RNAz p=0.572756
               

               
               602-761, - strand, RNAz p=0.936789

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-391, - strand, RNAz p=0.572756
               

               
               602-761, - strand, RNAz p=0.936789

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               272-816, gnl|bosTau2|chr19 (46939594-46939056)
               

               
               272-816, gnl|Hg17|chr17 (75383962-75383389)
               

               
               272-816, gnl|Mm7|chr11 (119148575-119148082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-816, gnl|bosTau2|chr19 (46939594-46939056)
               

               
               272-816, gnl|Hg17|chr17 (75383962-75383389)
               

               
               272-816, gnl|Mm7|chr11 (119148575-119148082)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	272-391, - strand, RNAz p=0.572756
	602-761, - strand, RNAz p=0.936789

	272-816, gnl\|bosTau2\|chr19 (46939594-46939056)
	272-816, gnl\|Hg17\|chr17 (75383962-75383389)
	272-816, gnl\|Mm7\|chr11 (119148575-119148082)