Non-Coding RNA Search

Ss1.1-Pig1-45G09.5

Sequence:


               
               GGCGCAGCTGAGCAAGGGCCAGTTTTCGAGCCATCAAGCCCCGAATGGTGTGGACCTTTC
GGACGGCATAGCTGAGGCGGGCGCTGAGGCTGGGCAGCCGGGCCGTGGCCCGCTCCACCT
CGGCCATGGTGCTCTGGAGCCAGGCCTGAAAGCTGCTGACGGCATTGGCCACAAGCTTCA
GCTGCTCCTCCGCCTCGGCCGTCTGCTGCTGCCTCCGGCGCCGGGCCTCCTGAGCGCGGC
TCAGCTCTATCTGCAGGGCCTTGGCGCTCATCCGCTCCACCTCCACCTCCGCGGCTTTGT
CTTGCAGGGAGCGCTCCAGGATGGCCCGTTCCTGGCCCTGGGTTTCAGCTCTTTCCTGGA
GCTCTGCCACCTGTCCCTTCAGCTGCTCCACGCATCCTCTGTGCTCCAGCTCCTGGGCCT
TCAGCTGCACCATGAGGGCGAACACCTTCTCCCGCCAGCGCTTCAGCAGGGCCTGGCACT
TCCTGGTGAACTCGGGCTCCAGGCAGTCTGAAGGCTGAACCTTGCGGGCCAGCTCCTCCT
CCTGTATGCAGAGGATGTGCGTGAGGCTCTGCACGCGCACCTGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCAGCTGAGCAAGGGCCAGTTTTCGAGCCATCAAGCCCCGAATGGTGTGGACCTTTC
GGACGGCATAGCTGAGGCGGGCGCTGAGGCTGGGCAGCCGGGCCGTGGCCCGCTCCACCT
CGGCCATGGTGCTCTGGAGCCAGGCCTGAAAGCTGCTGACGGCATTGGCCACAAGCTTCA
GCTGCTCCTCCGCCTCGGCCGTCTGCTGCTGCCTCCGGCGCCGGGCCTCCTGAGCGCGGC
TCAGCTCTATCTGCAGGGCCTTGGCGCTCATCCGCTCCACCTCCACCTCCGCGGCTTTGT
CTTGCAGGGAGCGCTCCAGGATGGCCCGTTCCTGGCCCTGGGTTTCAGCTCTTTCCTGGA
GCTCTGCCACCTGTCCCTTCAGCTGCTCCACGCATCCTCTGTGCTCCAGCTCCTGGGCCT
TCAGCTGCACCATGAGGGCGAACACCTTCTCCCGCCAGCGCTTCAGCAGGGCCTGGCACT
TCCTGGTGAACTCGGGCTCCAGGCAGTCTGAAGGCTGAACCTTGCGGGCCAGCTCCTCCT
CCTGTATGCAGAGGATGTGCGTGAGGCTCTGCACGCGCACCTGCAGCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               39-164, gnl|bosTau2|chr23 (20497677-20497552)
               

               
               39-164, gnl|Hg17|chr6 (31221451-31221576)
               

               
               39-164, gnl|Mm7|chr17 (33630191-33630066)
               


               
               366-522, gnl|bosTau2|chr23 (20495497-20495341)
               

               
               366-522, gnl|canFam2|chr12 (3851912-3852274)
               

               
               366-522, gnl|hg17|chr6 (31225809-31226231)
               

               
               366-522, gnl|Hg17|chr6 (31225817-31225973)
               

               
               366-522, gnl|mm7|chr17 (33627433-33627078)
               

               
               366-522, gnl|Mm7|chr17 (33627420-33627267)
               

               
               366-522, gnl|monDom2|scaffold_42 (18164669-18164238)
               

               
               366-522, gnl|panTro1|chr5 (31691224-31691646)
               

               
               366-522, gnl|rheMac2|chr4 (30721334-30721758)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-164, gnl|bosTau2|chr23 (20497677-20497552)
               

               
               39-164, gnl|Hg17|chr6 (31221451-31221576)
               

               
               39-164, gnl|Mm7|chr17 (33630191-33630066)
               


               
               366-522, gnl|bosTau2|chr23 (20495497-20495341)
               

               
               366-522, gnl|canFam2|chr12 (3851912-3852274)
               

               
               366-522, gnl|hg17|chr6 (31225809-31226231)
               

               
               366-522, gnl|Hg17|chr6 (31225817-31225973)
               

               
               366-522, gnl|mm7|chr17 (33627433-33627078)
               

               
               366-522, gnl|Mm7|chr17 (33627420-33627267)
               

               
               366-522, gnl|monDom2|scaffold_42 (18164669-18164238)
               

               
               366-522, gnl|panTro1|chr5 (31691224-31691646)
               

               
               366-522, gnl|rheMac2|chr4 (30721334-30721758)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	39-164, gnl\|bosTau2\|chr23 (20497677-20497552)
	39-164, gnl\|Hg17\|chr6 (31221451-31221576)
	39-164, gnl\|Mm7\|chr17 (33630191-33630066)

	366-522, gnl\|bosTau2\|chr23 (20495497-20495341)
	366-522, gnl\|canFam2\|chr12 (3851912-3852274)
	366-522, gnl\|hg17\|chr6 (31225809-31226231)
	366-522, gnl\|Hg17\|chr6 (31225817-31225973)
	366-522, gnl\|mm7\|chr17 (33627433-33627078)
	366-522, gnl\|Mm7\|chr17 (33627420-33627267)
	366-522, gnl\|monDom2\|scaffold_42 (18164669-18164238)
	366-522, gnl\|panTro1\|chr5 (31691224-31691646)
	366-522, gnl\|rheMac2\|chr4 (30721334-30721758)