Non-Coding RNA Search

Ss1.1-Pig1-45L11.5

Sequence:


               
               GCCGGAGGACTTCCGTCTTTTGTACACACGATCGAGAGTACGGTTCCCCAAAGGGCAGTC
GGTCAGCCATCGGTCATATTGACCTCACCTTCATAGTGCATCTCTCACGCGGAACCTGAG
AACTTTGCTCCCCGTAGAATTGTGGAAACTCGCCCTGCTGCCTTCTTTCCTCTGTCTGGC
ATGCTTGTGACCCAGCGGACGTCTCCCCAAGACCCCTGACAGCGGCTAGTCTAGGTTGAG
TCGATCATCTTAGCGGTGTGTAGATCCAGTGCGACCAACTTTCATAACAAATCATAGTAG
ATAAATCCGCACCGTCTGGATTTTCCAAGCGTTACTTCAGAGCACCAACAGATCAGGACC
GCGGGAGGGCCGGTCCTCCTCCACTCTGATTAAGGCACAACCTGGCATTGTATGCGATTT
AGTACTTCAGAGTCAAAAAGAAAAACACCAACCACCACCACCACAACAAAAACCCCTGCA
TGCCCAATGTTATGCAAAGCGATTCTAGCATGAAATAAATTTTGTATCATGGTTTCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGAGGACTTCCGTCTTTTGTACACACGATCGAGAGTACGGTTCCCCAAAGGGCAGTC
GGTCAGCCATCGGTCATATTGACCTCACCTTCATAGTGCATCTCTCACGCGGAACCTGAG
AACTTTGCTCCCCGTAGAATTGTGGAAACTCGCCCTGCTGCCTTCTTTCCTCTGTCTGGC
ATGCTTGTGACCCAGCGGACGTCTCCCCAAGACCCCTGACAGCGGCTAGTCTAGGTTGAG
TCGATCATCTTAGCGGTGTGTAGATCCAGTGCGACCAACTTTCATAACAAATCATAGTAG
ATAAATCCGCACCGTCTGGATTTTCCAAGCGTTACTTCAGAGCACCAACAGATCAGGACC
GCGGGAGGGCCGGTCCTCCTCCACTCTGATTAAGGCACAACCTGGCATTGTATGCGATTT
AGTACTTCAGAGTCAAAAAGAAAAACACCAACCACCACCACCACAACAAAAACCCCTGCA
TGCCCAATGTTATGCAAAGCGATTCTAGCATGAAATAAATTTTGTATCATGGTTTCTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-443, - strand, RNAz p=0.598313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-443, - strand, RNAz p=0.598313

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-443, gnl|bosTau2|chr15 (19603415-19602983)
               

               
               17-443, gnl|Hg17|chr11 (17760360-17760790)
               

               
               17-443, gnl|Mm7|chr7 (42614063-42614498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-443, gnl|bosTau2|chr15 (19603415-19602983)
               

               
               17-443, gnl|Hg17|chr11 (17760360-17760790)
               

               
               17-443, gnl|Mm7|chr7 (42614063-42614498)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ldo (0.0970026)

	17-443, gnl\|bosTau2\|chr15 (19603415-19602983)
	17-443, gnl\|Hg17\|chr11 (17760360-17760790)
	17-443, gnl\|Mm7\|chr7 (42614063-42614498)