Non-Coding RNA Search

Ss1.1-Pig1-45P02.5

Sequence:


               
               GAATCACAGACCTTTTTCAAAGAGGCTTCTGGACCCGAGGAAACCCTCCCTCAGCTCCCC
GCACGCAGGGTGGCAGTGGAGCCGGAGCGAGGAGCCGGCTCCGTATCCCGTGGCTCGTGG
CCGCCCTGGTCACTGCGCTCAGGGGGGCTCCCGGAGGAGGGAACGCGGGTGCAGGAGCTC
CAGCGGCGGCTCCTTTTACTTGAAGTTCTCCTTGAGTGTAGATTACAAGCGAGTTGCTTT
CCTTTCTCGTCTCTCGCCTGCCCCCCTTTGCACATGACCTGCCACCCCTCTTGCTGGCCA
GCTGTGATCTCGTGAGTTAGGGACGGAGAGTCGGTCTCAGGGCAGGTGTTTGAATGCCTC
TGAGAGAGAGATTCGTACGGGACCTTTTTCATTTGGGAACTTGTATTGATTGATTGATTG
TGTCTACTGCCAATGTTTATATCCAGTTCCAAGGTTTCTGAAGAAGAATTCTTGTTCCTT
GCTGCTCAGAAAAAGTTTACCGAAAATACCAGTTCACTAAAAGCACTGAAATCTGCCAAG
TCTGTCTTCTGCTAAGTACCGTTTACACGTACAGCGGGCCCTTGCCGCCACGTGGCCGTG
GGACGTGGATGCTACGCTTGCCAGCCCTGGCCTCGTTGAACTCAGGCAAGTCGAGCAGGT
GGCGGCCTCGTGACGTTTTGGGCACAGCGCTCCAATGAGGTGTTCACTTTAATAAAGACA
GATTTTGGTAAAGTAGAGTATTTTTCACTCTGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCACAGACCTTTTTCAAAGAGGCTTCTGGACCCGAGGAAACCCTCCCTCAGCTCCCC
GCACGCAGGGTGGCAGTGGAGCCGGAGCGAGGAGCCGGCTCCGTATCCCGTGGCTCGTGG
CCGCCCTGGTCACTGCGCTCAGGGGGGCTCCCGGAGGAGGGAACGCGGGTGCAGGAGCTC
CAGCGGCGGCTCCTTTTACTTGAAGTTCTCCTTGAGTGTAGATTACAAGCGAGTTGCTTT
CCTTTCTCGTCTCTCGCCTGCCCCCCTTTGCACATGACCTGCCACCCCTCTTGCTGGCCA
GCTGTGATCTCGTGAGTTAGGGACGGAGAGTCGGTCTCAGGGCAGGTGTTTGAATGCCTC
TGAGAGAGAGATTCGTACGGGACCTTTTTCATTTGGGAACTTGTATTGATTGATTGATTG
TGTCTACTGCCAATGTTTATATCCAGTTCCAAGGTTTCTGAAGAAGAATTCTTGTTCCTT
GCTGCTCAGAAAAAGTTTACCGAAAATACCAGTTCACTAAAAGCACTGAAATCTGCCAAG
TCTGTCTTCTGCTAAGTACCGTTTACACGTACAGCGGGCCCTTGCCGCCACGTGGCCGTG
GGACGTGGATGCTACGCTTGCCAGCCCTGGCCTCGTTGAACTCAGGCAAGTCGAGCAGGT
GGCGGCCTCGTGACGTTTTGGGCACAGCGCTCCAATGAGGTGTTCACTTTAATAAAGACA
GATTTTGGTAAAGTAGAGTATTTTTCACTCTGAGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr11 (85905649-85904894)
               

               
               1-756, gnl|Hg17|chr9 (135928975-135928196)
               

               
               1-756, gnl|Mm7|chr2 (25936957-25936204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr11 (85905649-85904894)
               

               
               1-756, gnl|Hg17|chr9 (135928975-135928196)
               

               
               1-756, gnl|Mm7|chr2 (25936957-25936204)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               cov (0.132153)

	1-756, gnl\|bosTau2\|chr11 (85905649-85904894)
	1-756, gnl\|Hg17\|chr9 (135928975-135928196)
	1-756, gnl\|Mm7\|chr2 (25936957-25936204)