Non-Coding RNA Search

Ss1.1-Pig1-46A22.5

Sequence:


               
               TGCTGCAATTTTTATAAAGGTAGTTGTACGTGAACATCCCAGGTCACCCAAGAGGCAGAC
TGCCTGTCTTCACCAGGATGCTTGCTCTTCTCAATTCCAGTTCCAGACCCTGGGGTGTTA
GGGCCACAGGAAAGGTGTTTATTGCCCGAGTCCGTCTTCCTCCCTTGTGTCTGACCTTCT
GAAGGCACAGTCCAACCTGCACCTGCTTCCAACCCACCTGTGCTGACAACATTCTCCCTG
CACAGCCCATGCCCAACTGTGAACAGCCTGCCTGCTCAGGGCCATGAGGGGGGGCATTTT
CTGGGTGAAAGAGGAAGAAGGCAGCTGGTGGTAAAGGTGGTCTCACTTTACAGGATGTGT
GTACGTGTGTGCGTGCGTGTGGGTGTACACACGTGTCAGAAGGTCACCCACAGCTGGCTT
CCCTCCTCTCTCCCACTAAGTTCTGAAGGGACCTGCTTCCTTGGCCTGGCTTCCCGCCTC
TTACATCCCAAGTTTCTACCTGACCAGTAAAGAGGTCTGTGTTGAAGCTTGGCAGTTTTC
TGAGTTTCTCCTGTCCTGTGACCAGAATGGTGAGGGAACAAACTCTGTTTTACCTGAGGG
CTTCATCTCAATAATCAGGTCATCAGGGACCCGATCTTTTGTGTGTGTGTATGTGTGCAT
GTGTGTGTGCTCGGGACCTGTTCTTTTCAAAATCCTGTTCTGGGGGGTGCACCAGCTCCC
GGGGTTCCATCATGTCACCAGAATGGGTACCCCATCTGTGCAAACCACCTACCCCCAGCT
GCCTCCTCTGACACCTGTCTCCTTGTCCTCCCCTCCCCTACCTTCAGGGCTGTTGTGAGA
CAAGGAATCCCAGGGAAGAATCCAGGTGTCTGGACCCTGTCTAGATAATATTTTTAGATT
CCTCTGCTCCCTAGTGGTCTGCTTTGGGGCAAACAAACAAAAATTGTGATGACTTTTTTT
TAAGGGGTCAGAGTTTTAAAAACAAAAGCATCTACCGTAGAAACTTTTGTGAAGTTTGTT
TGCACTTGTGCCCGTTTTAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGCAATTTTTATAAAGGTAGTTGTACGTGAACATCCCAGGTCACCCAAGAGGCAGAC
TGCCTGTCTTCACCAGGATGCTTGCTCTTCTCAATTCCAGTTCCAGACCCTGGGGTGTTA
GGGCCACAGGAAAGGTGTTTATTGCCCGAGTCCGTCTTCCTCCCTTGTGTCTGACCTTCT
GAAGGCACAGTCCAACCTGCACCTGCTTCCAACCCACCTGTGCTGACAACATTCTCCCTG
CACAGCCCATGCCCAACTGTGAACAGCCTGCCTGCTCAGGGCCATGAGGGGGGGCATTTT
CTGGGTGAAAGAGGAAGAAGGCAGCTGGTGGTAAAGGTGGTCTCACTTTACAGGATGTGT
GTACGTGTGTGCGTGCGTGTGGGTGTACACACGTGTCAGAAGGTCACCCACAGCTGGCTT
CCCTCCTCTCTCCCACTAAGTTCTGAAGGGACCTGCTTCCTTGGCCTGGCTTCCCGCCTC
TTACATCCCAAGTTTCTACCTGACCAGTAAAGAGGTCTGTGTTGAAGCTTGGCAGTTTTC
TGAGTTTCTCCTGTCCTGTGACCAGAATGGTGAGGGAACAAACTCTGTTTTACCTGAGGG
CTTCATCTCAATAATCAGGTCATCAGGGACCCGATCTTTTGTGTGTGTGTATGTGTGCAT
GTGTGTGTGCTCGGGACCTGTTCTTTTCAAAATCCTGTTCTGGGGGGTGCACCAGCTCCC
GGGGTTCCATCATGTCACCAGAATGGGTACCCCATCTGTGCAAACCACCTACCCCCAGCT
GCCTCCTCTGACACCTGTCTCCTTGTCCTCCCCTCCCCTACCTTCAGGGCTGTTGTGAGA
CAAGGAATCCCAGGGAAGAATCCAGGTGTCTGGACCCTGTCTAGATAATATTTTTAGATT
CCTCTGCTCCCTAGTGGTCTGCTTTGGGGCAAACAAACAAAAATTGTGATGACTTTTTTT
TAAGGGGTCAGAGTTTTAAAAACAAAAGCATCTACCGTAGAAACTTTTGTGAAGTTTGTT
TGCACTTGTGCCCGTTTTAAATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               783-976, - strand, RNAz p=0.830353
               

               
               840-985, + strand, RNAz p=0.989837

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               783-976, - strand, RNAz p=0.830353
               

               
               840-985, + strand, RNAz p=0.989837

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC035596, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC035596, +

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               8-649, gnl|bosTau2|chr10 (23665769-23666420)
               

               
               8-649, gnl|Hg17|chr15 (38355913-38356597)
               

               
               8-649, gnl|Mm7|chr2 (118437761-118438475)
               


               
               660-1044, gnl|bosTau2|chr10 (23666413-23666783)
               

               
               660-1044, gnl|canFam2|chr30 (10450671-10451247)
               

               
               660-1044, gnl|dasNov1|scaffold_2380 (18791-19380)
               

               
               660-1044, gnl|echTel1|scaffold_310829 (87854-87292)
               

               
               660-1044, gnl|hg17|chr15 (38356313-38356877)
               

               
               660-1044, gnl|Hg17|chr15 (38356598-38356961)
               

               
               660-1044, gnl|mm7|chr2 (118438195-118438767)
               

               
               660-1044, gnl|Mm7|chr2 (118438476-118438854)
               

               
               660-1044, gnl|monDom2|scaffold_12 (2194302-2193647)
               

               
               660-1044, gnl|panTro1|chr16 (38239088-38239652)
               

               
               660-1044, gnl|rheMac2|chr7 (18610771-18611340)
               

               
               660-1044, gnl|rn3|chr3 (105088885-105089431)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-649, gnl|bosTau2|chr10 (23665769-23666420)
               

               
               8-649, gnl|Hg17|chr15 (38355913-38356597)
               

               
               8-649, gnl|Mm7|chr2 (118437761-118438475)
               


               
               660-1044, gnl|bosTau2|chr10 (23666413-23666783)
               

               
               660-1044, gnl|canFam2|chr30 (10450671-10451247)
               

               
               660-1044, gnl|dasNov1|scaffold_2380 (18791-19380)
               

               
               660-1044, gnl|echTel1|scaffold_310829 (87854-87292)
               

               
               660-1044, gnl|hg17|chr15 (38356313-38356877)
               

               
               660-1044, gnl|Hg17|chr15 (38356598-38356961)
               

               
               660-1044, gnl|mm7|chr2 (118438195-118438767)
               

               
               660-1044, gnl|Mm7|chr2 (118438476-118438854)
               

               
               660-1044, gnl|monDom2|scaffold_12 (2194302-2193647)
               

               
               660-1044, gnl|panTro1|chr16 (38239088-38239652)
               

               
               660-1044, gnl|rheMac2|chr7 (18610771-18611340)
               

               
               660-1044, gnl|rn3|chr3 (105088885-105089431)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fco (0.157208)

	783-976, - strand, RNAz p=0.830353
	840-985, + strand, RNAz p=0.989837

	8-649, gnl\|bosTau2\|chr10 (23665769-23666420)
	8-649, gnl\|Hg17\|chr15 (38355913-38356597)
	8-649, gnl\|Mm7\|chr2 (118437761-118438475)

	660-1044, gnl\|bosTau2\|chr10 (23666413-23666783)
	660-1044, gnl\|canFam2\|chr30 (10450671-10451247)
	660-1044, gnl\|dasNov1\|scaffold_2380 (18791-19380)
	660-1044, gnl\|echTel1\|scaffold_310829 (87854-87292)
	660-1044, gnl\|hg17\|chr15 (38356313-38356877)
	660-1044, gnl\|Hg17\|chr15 (38356598-38356961)
	660-1044, gnl\|mm7\|chr2 (118438195-118438767)
	660-1044, gnl\|Mm7\|chr2 (118438476-118438854)
	660-1044, gnl\|monDom2\|scaffold_12 (2194302-2193647)
	660-1044, gnl\|panTro1\|chr16 (38239088-38239652)
	660-1044, gnl\|rheMac2\|chr7 (18610771-18611340)
	660-1044, gnl\|rn3\|chr3 (105088885-105089431)