Non-Coding RNA Search

Ss1.1-Pig1-46H16.5

Sequence:


               
               AGTGCTTTTTTACTGGGCAATGCAGTTACAGGTAATTTTTATTTTATTTATGTACATGAA
TTACATTTGTAAGTATAAAAATAAATCTTTTTTAAAATGAGTCTTTCCAAATCTAAGAGA
AAAATTATTCCAATGCCCAAATTTTGTGGCAAACTTCCTGTTCACAATTTTCAAATCCTT
TCTGATTTCATAAACTTTGATAGAGTTTTTCTGATTATTAAATGATCATTTAATTTCCAT
GTTACCTGAGGATTTTTGAAGCAATAAACATTTTTTAAGCTCTGTTTTGACTTTCACATG
AGTTACTAGAATATTATATAGAAATCACAATTCCATTAAATTATTGACACTAGTGGTACA
CCAAATACCTATTGTCAGTAATCAGTATATTTAGCACTATTGGTAGGCTGTCATAATGAG
GAACTCTAGATAATGCCTGCATGTAACTTCAGATAATACAACTTCACAGATTATTTCACA
AATAAAACTAGCTCTTATTAAAATAGCAGCATAAGTATTAATAAATTTATTCTTTATTAA
GGAGAAATCAGGATTAACAATAACAAAAACCTCACAAGACTAGCCTAAACACCAGTCCAA
------------AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTAAAAAAAAAAAAAA
AAAAGGGGGGGGCCTTTTTAAATTTTTTTGGGGGGGGCCAAATTTTCCCCCCCCCCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCTTTTTTACTGGGCAATGCAGTTACAGGTAATTTTTATTTTATTTATGTACATGAA
TTACATTTGTAAGTATAAAAATAAATCTTTTTTAAAATGAGTCTTTCCAAATCTAAGAGA
AAAATTATTCCAATGCCCAAATTTTGTGGCAAACTTCCTGTTCACAATTTTCAAATCCTT
TCTGATTTCATAAACTTTGATAGAGTTTTTCTGATTATTAAATGATCATTTAATTTCCAT
GTTACCTGAGGATTTTTGAAGCAATAAACATTTTTTAAGCTCTGTTTTGACTTTCACATG
AGTTACTAGAATATTATATAGAAATCACAATTCCATTAAATTATTGACACTAGTGGTACA
CCAAATACCTATTGTCAGTAATCAGTATATTTAGCACTATTGGTAGGCTGTCATAATGAG
GAACTCTAGATAATGCCTGCATGTAACTTCAGATAATACAACTTCACAGATTATTTCACA
AATAAAACTAGCTCTTATTAAAATAGCAGCATAAGTATTAATAAATTTATTCTTTATTAA
GGAGAAATCAGGATTAACAATAACAAAAACCTCACAAGACTAGCCTAAACACCAGTCCAA
------------AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTAAAAAAAAAAAAAA
AAAAGGGGGGGGCCTTTTTAAATTTTTTTGGGGGGGGCCAAATTTTCCCCCCCCCCTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BXC0_SCHJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BXC0_SCHJA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-646, gnl|bosTau2|chr4 (48336987-48337646)
               

               
               1-646, gnl|Hg17|chr7 (126576383-126577048)
               

               
               1-646, gnl|Mm7|chr6 (28142239-28142856)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-646, gnl|bosTau2|chr4 (48336987-48337646)
               

               
               1-646, gnl|Hg17|chr7 (126576383-126577048)
               

               
               1-646, gnl|Mm7|chr6 (28142239-28142856)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	1-646, gnl\|bosTau2\|chr4 (48336987-48337646)
	1-646, gnl\|Hg17\|chr7 (126576383-126577048)
	1-646, gnl\|Mm7\|chr6 (28142239-28142856)