Non-Coding RNA Search

Ss1.1-Pig1-46K21.5

Sequence:


               
               CTCTTGTCCTAGGCACTAAAACATTTGCTGAGTGCATGAAACACAAAGATAAGAAATCTG
TGGCAGCAATATGGATGCAACTAGAGAGTCTCACACTAAGTGAAGTCAGTCAGAAAGAGA
AAGACAAATACCACATGACATCACTTATGTGTGGAATCTGAAATGTGGCGCACACAAACC
TGTCTACGGAACAGAAACAGACTCACAGCACAGACATGGAGAATAGGCTTGTGGTCGCCA
AGGGGGAGGGAGAGGGAGTTGACAGACAGTGAGTTTGGGGTTAGTGCTGCAAACTTTTAT
TTTGAATGGATAAGCAAGGAGGTCCTACCGTACAGCACAGGGAACTAGAGCCAATCTCTT
GGATAGAAGAGGACGGAAGAGAACACGAGAAGAATGTGTGTATGTATGACTGGCTCACTT
CGCTGCATAGCAGAAACTCATACAACACTGTAAATCTACTCTACTTTAATAAAAAGATTA
AAAAAAGAAAAACCAAAAAACTCATCTGTAAATGTAAAGAAAGAAGACAAATAATGGAAC
ACAGAGTCTCAAATATAATAGCCTGGAAAACAGAAGAAAGAGTTATCTTTGAGGTTTTAT
CCAGCCTTTTGATTCAGAGCCAACAAAGAGGAATTTAAAGTAATGAACCACTCCCTGATT
TCAGGTGGGAAGACAGATTGCAAATGAAAAGATTATGATTTCTTTTACTTAATCTGTTAC
AATGAAATATTTCTTACACATGCAGCCCTTGAGGTGAATTTCTTCAGTCATTTGTTATAC
AGCGCATAGGAAAACAGGGCTCGCTGAGATATTCTCGATACCCCAGGTTTAAAAAAGAAG
GCGAGGAGCTCTCAAGGGCATTCACATTTGTATACTTATAACACAGTACAAAGGATTTGG
TAAATACTTATTGAATGACCAACTGAACAAACGAATGGATGAGGTGAAAGTCAATTATAG
TGTTCTGGTCAGGCTACTCAGAAAACGACGAGAGAGGAAATTCATAGGAAACTCTTAGAT
GTATCCTACAGCACGCATCTGTCTAATGGGTCCTATAGGCATAACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGTCCTAGGCACTAAAACATTTGCTGAGTGCATGAAACACAAAGATAAGAAATCTG
TGGCAGCAATATGGATGCAACTAGAGAGTCTCACACTAAGTGAAGTCAGTCAGAAAGAGA
AAGACAAATACCACATGACATCACTTATGTGTGGAATCTGAAATGTGGCGCACACAAACC
TGTCTACGGAACAGAAACAGACTCACAGCACAGACATGGAGAATAGGCTTGTGGTCGCCA
AGGGGGAGGGAGAGGGAGTTGACAGACAGTGAGTTTGGGGTTAGTGCTGCAAACTTTTAT
TTTGAATGGATAAGCAAGGAGGTCCTACCGTACAGCACAGGGAACTAGAGCCAATCTCTT
GGATAGAAGAGGACGGAAGAGAACACGAGAAGAATGTGTGTATGTATGACTGGCTCACTT
CGCTGCATAGCAGAAACTCATACAACACTGTAAATCTACTCTACTTTAATAAAAAGATTA
AAAAAAGAAAAACCAAAAAACTCATCTGTAAATGTAAAGAAAGAAGACAAATAATGGAAC
ACAGAGTCTCAAATATAATAGCCTGGAAAACAGAAGAAAGAGTTATCTTTGAGGTTTTAT
CCAGCCTTTTGATTCAGAGCCAACAAAGAGGAATTTAAAGTAATGAACCACTCCCTGATT
TCAGGTGGGAAGACAGATTGCAAATGAAAAGATTATGATTTCTTTTACTTAATCTGTTAC
AATGAAATATTTCTTACACATGCAGCCCTTGAGGTGAATTTCTTCAGTCATTTGTTATAC
AGCGCATAGGAAAACAGGGCTCGCTGAGATATTCTCGATACCCCAGGTTTAAAAAAGAAG
GCGAGGAGCTCTCAAGGGCATTCACATTTGTATACTTATAACACAGTACAAAGGATTTGG
TAAATACTTATTGAATGACCAACTGAACAAACGAATGGATGAGGTGAAAGTCAATTATAG
TGTTCTGGTCAGGCTACTCAGAAAACGACGAGAGAGGAAATTCATAGGAAACTCTTAGAT
GTATCCTACAGCACGCATCTGTCTAATGGGTCCTATAGGCATAACCAC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               15-474, gnl|bosTau2|chr1 (5597451-5597007)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-474, gnl|bosTau2|chr1 (5597451-5597007)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               csk (0.281492)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	csk (0.281492)
	cmu (0.186393)
	fty (0.17584)
	spl (0.143184)
	thg (0.126791)
	eje (0.0988338)