Non-Coding RNA Search

Ss1.1-Pig1-46M10.5

Sequence:


               
               TCCGTGTCCACCCCAATAAAAGGATCTTTCCTACCCGACCTCGAGTCTTTGCTCGGCGTG
CCTCAGCCCCAGAGGACGGAGCCACTGAAAGTCTTCCCGTCATCAACAAGACGAGCCGAG
AGAGGCCCCCAGACACTGGGGCCCCAGGACCAGCTGGATTCTCTCAGGGCCCTGCCACGG
CTATCTCACTCAGAGCCAAGACCTGCCTGGACCCGGCCCTCTTCCTCACCCGCCAAGGTG
TCCCCAGGACCAGGACACCCTGGAGAGACAGACAGTCCATGCTGCCAAGGATGGAGCTGT
GGTGGACCCCACTCCCAGGACCCTGGCGAGCAGGGCGGCATGCCCATCAGCCACCATGGA
GACAACCCAGGTGGCCTGGCCTCACACCCTGGCTCAGAGAGGAGACACACGGAGCGCCTT
GGATCACCCAGCCCCAGTGCTGTTGGTCGGCAGGTTCCGCGACCACTCACGGGCACCAGC
TGGGCTGGGTCTGGGCCTGAGCCTGGGGACGTAGGGGACATTTGGGCTCCAGGAAGAAGG
TGTGAGGCCCTGACCACTCCATTTGGGTACAGGACCAGCAGGGTTGCCCCTTCTCCCCCC
ACCAGCACTGAACGGGAGCCAGGGTGTTGAAGCTGATTGCTGGGGTGTTGTGGCCATTTG
GGGATTGGGCCGTGGAGCTAGGGACTTCTGCTTCAACAGAGGAGTGCCAGGGTGGGAGCA
ATGATCACTGTGTCCTTCCCCGAGGCTAGCCTATGCCTCCCTGGCCCCTTGCCCAGCGCC
GAAGAACTGGGTGTTTCCAGGGGCAGCCGCCCAGCTTTGCTGTGGGGCCCAGCTCTGGGG
GCGTCTACAGCAGTGTTCAGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGTGTCCACCCCAATAAAAGGATCTTTCCTACCCGACCTCGAGTCTTTGCTCGGCGTG
CCTCAGCCCCAGAGGACGGAGCCACTGAAAGTCTTCCCGTCATCAACAAGACGAGCCGAG
AGAGGCCCCCAGACACTGGGGCCCCAGGACCAGCTGGATTCTCTCAGGGCCCTGCCACGG
CTATCTCACTCAGAGCCAAGACCTGCCTGGACCCGGCCCTCTTCCTCACCCGCCAAGGTG
TCCCCAGGACCAGGACACCCTGGAGAGACAGACAGTCCATGCTGCCAAGGATGGAGCTGT
GGTGGACCCCACTCCCAGGACCCTGGCGAGCAGGGCGGCATGCCCATCAGCCACCATGGA
GACAACCCAGGTGGCCTGGCCTCACACCCTGGCTCAGAGAGGAGACACACGGAGCGCCTT
GGATCACCCAGCCCCAGTGCTGTTGGTCGGCAGGTTCCGCGACCACTCACGGGCACCAGC
TGGGCTGGGTCTGGGCCTGAGCCTGGGGACGTAGGGGACATTTGGGCTCCAGGAAGAAGG
TGTGAGGCCCTGACCACTCCATTTGGGTACAGGACCAGCAGGGTTGCCCCTTCTCCCCCC
ACCAGCACTGAACGGGAGCCAGGGTGTTGAAGCTGATTGCTGGGGTGTTGTGGCCATTTG
GGGATTGGGCCGTGGAGCTAGGGACTTCTGCTTCAACAGAGGAGTGCCAGGGTGGGAGCA
ATGATCACTGTGTCCTTCCCCGAGGCTAGCCTATGCCTCCCTGGCCCCTTGCCCAGCGCC
GAAGAACTGGGTGTTTCCAGGGGCAGCCGCCCAGCTTTGCTGTGGGGCCCAGCTCTGGGG
GCGTCTACAGCAGTGTTCAGTTCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               80-198, - strand, RNAz p=0.864347
               

               
               237-395, + strand, RNAz p=0.889001
               

               
               540-659, - strand, RNAz p=0.730896

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-198, - strand, RNAz p=0.864347
               

               
               237-395, + strand, RNAz p=0.889001
               

               
               540-659, - strand, RNAz p=0.730896

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-864, gnl|bosTau2|chr7 (2779243-2778398)
               

               
               1-864, gnl|Hg17|chr19 (17292067-17293662)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr7 (2779243-2778398)
               

               
               1-864, gnl|Hg17|chr19 (17292067-17293662)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	80-198, - strand, RNAz p=0.864347
	237-395, + strand, RNAz p=0.889001
	540-659, - strand, RNAz p=0.730896

	1-864, gnl\|bosTau2\|chr7 (2779243-2778398)
	1-864, gnl\|Hg17\|chr19 (17292067-17293662)