Ss1.1-Pig1-46O02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAAGCTGGTGCAGCTGTACGCCGTGGTGTCGGAGGAGCCCATCTACATCGTGACGGAG TTTATGTGCCACGGTAGCTTGCTGGAGTTTCTCAAGAACCGGGAGGGCCAGGATTTGAGG CTGCCGCATCTGGTGGACATGGCAGCCCAGGTAGCTGAGGGCATGGCCTACATGGAGCGC ATGAACTACATCCACCGAGACCTGCGGGCAGCCAACATCCTTGTGGGGGAGCGGCTGGTG TGCAAGATCGCTGACTTCGGGCTGGCTCGTTTCAGGGAGGATGATGAGTACAACCCCCAG CAAGGGACCAAATTCCCCATCAAGTGGACAGCCCCAGAGGCTGCCCTCTTTGGCAGATTC ACCATCAAGTCAGATGTGTGGTCCTTTGGGATCCTGCTCACTGAACTCATCACCAAGGGC CGAGTCCCCTACCCAGGGATGAATAACCGGGAAGTGCTGGAACAGGTGGAGCATGGCTAC CACATGCCATGCCCTCCAGGCTGCCCAGCATCCTTGTACGAGGCCATGGAACAGACCTGG CGTCTGGACCCAGAGGAGAGGCCGACCTTCGAGTATCTGCAGTCCTTTCTGGAGGACTAT TTCACCTCCACAGAACCGCAGTACCAGCCTGGGGATGAGACATAGCCTGTTTGCGTATCT ACCAGCTCTCTGGGTGTGCCCACCAGCCCCTTCCAATCCCCAGGGCTCTGGTCCCAAAGC CCCCAGGCCTAGAACCTTGTAGNGTCCTGGTNTGTCTGAGCAAGCCANTTGCTCTGGCAC ------------CCTATTCATTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAAGCTGGTGCAGCTGTACGCCGTGGTGTCGGAGGAGCCCATCTACATCGTGACGGAG TTTATGTGCCACGGTAGCTTGCTGGAGTTTCTCAAGAACCGGGAGGGCCAGGATTTGAGG CTGCCGCATCTGGTGGACATGGCAGCCCAGGTAGCTGAGGGCATGGCCTACATGGAGCGC ATGAACTACATCCACCGAGACCTGCGGGCAGCCAACATCCTTGTGGGGGAGCGGCTGGTG TGCAAGATCGCTGACTTCGGGCTGGCTCGTTTCAGGGAGGATGATGAGTACAACCCCCAG CAAGGGACCAAATTCCCCATCAAGTGGACAGCCCCAGAGGCTGCCCTCTTTGGCAGATTC ACCATCAAGTCAGATGTGTGGTCCTTTGGGATCCTGCTCACTGAACTCATCACCAAGGGC CGAGTCCCCTACCCAGGGATGAATAACCGGGAAGTGCTGGAACAGGTGGAGCATGGCTAC CACATGCCATGCCCTCCAGGCTGCCCAGCATCCTTGTACGAGGCCATGGAACAGACCTGG CGTCTGGACCCAGAGGAGAGGCCGACCTTCGAGTATCTGCAGTCCTTTCTGGAGGACTAT TTCACCTCCACAGAACCGCAGTACCAGCCTGGGGATGAGACATAGCCTGTTTGCGTATCT ACCAGCTCTCTGGGTGTGCCCACCAGCCCCTTCCAATCCCCAGGGCTCTGGTCCCAAAGC CCCCAGGCCTAGAACCTTGTAGNGTCCTGGTNTGTCTGAGCAAGCCANTTGCTCTGGCAC ------------CCTATTCATTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 433-551, + strand, RNAz p=0.600888 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 433-551, + strand, RNAz p=0.600888 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005248, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 148-306, gnl|bosTau2|chr2 (73553005-73553162) | |
| 148-306, gnl|Hg17|chr1 (32414532-32414689) | |
| 148-306, gnl|Mm7|chr4 (128996520-128996363) | |
| 160-305, gnl|bosTau2|chr13 (49326688-49326543) | |
| 160-305, gnl|canFam2|chr24 (28987837-28988004) | |
| 160-305, gnl|danRer3|chr18 (19389719-19389555) | |
| 160-305, gnl|dasNov1|scaffold_128174 (4284-4117) | |
| 160-305, gnl|echTel1|scaffold_243420 (2894-3061) | |
| 160-305, gnl|fr1|chrUn (40133536-40133708) | |
| 160-305, gnl|galGal2|chr20 (4818651-4818818) | |
| 160-305, gnl|hg17|chr20 (35464242-35464409) | |
| 160-305, gnl|Hg17|chr20 (35464261-35464406) | |
| 160-305, gnl|loxAfr1|scaffold_79541 (4799-4640) | |
| 160-305, gnl|mm7|chr2 (157210008-157210172) | |
| 160-305, gnl|Mm7|chr2 (157210024-157210169) | |
| 160-305, gnl|monDom2|scaffold_6 (2183897-2183730) | |
| 160-305, gnl|oryCun1|scaffold_213597 (93947-94113) | |
| 160-305, gnl|panTro1|chr21 (37787354-37787521) | |
| 160-305, gnl|rheMac2|chr10 (27059680-27059513) | |
| 160-305, gnl|rn3|chr3 (148075183-148075347) | |
| 160-305, gnl|tetNig1|chr6 (4456212-4456045) | |
| 160-305, gnl|xenTro1|scaffold_637 (275589-275747) | |
| 433-777, gnl|bosTau2|chr2 (78938063-78938406) | |
| 433-777, gnl|Hg17|chr1 (27623779-27623434) | |
| 433-777, gnl|Mm7|chr4 (132378564-132378913) | |
| 434-635, gnl|bosTau2|chr13 (49325955-49325754) | |
| 434-635, gnl|Hg17|chr20 (35464985-35465186) | |
| 434-635, gnl|Mm7|chr2 (157210640-157210841) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-306, gnl|bosTau2|chr2 (73553005-73553162) | |
| 148-306, gnl|Hg17|chr1 (32414532-32414689) | |
| 148-306, gnl|Mm7|chr4 (128996520-128996363) | |
| 160-305, gnl|bosTau2|chr13 (49326688-49326543) | |
| 160-305, gnl|canFam2|chr24 (28987837-28988004) | |
| 160-305, gnl|danRer3|chr18 (19389719-19389555) | |
| 160-305, gnl|dasNov1|scaffold_128174 (4284-4117) | |
| 160-305, gnl|echTel1|scaffold_243420 (2894-3061) | |
| 160-305, gnl|fr1|chrUn (40133536-40133708) | |
| 160-305, gnl|galGal2|chr20 (4818651-4818818) | |
| 160-305, gnl|hg17|chr20 (35464242-35464409) | |
| 160-305, gnl|Hg17|chr20 (35464261-35464406) | |
| 160-305, gnl|loxAfr1|scaffold_79541 (4799-4640) | |
| 160-305, gnl|mm7|chr2 (157210008-157210172) | |
| 160-305, gnl|Mm7|chr2 (157210024-157210169) | |
| 160-305, gnl|monDom2|scaffold_6 (2183897-2183730) | |
| 160-305, gnl|oryCun1|scaffold_213597 (93947-94113) | |
| 160-305, gnl|panTro1|chr21 (37787354-37787521) | |
| 160-305, gnl|rheMac2|chr10 (27059680-27059513) | |
| 160-305, gnl|rn3|chr3 (148075183-148075347) | |
| 160-305, gnl|tetNig1|chr6 (4456212-4456045) | |
| 160-305, gnl|xenTro1|scaffold_637 (275589-275747) | |
| 433-777, gnl|bosTau2|chr2 (78938063-78938406) | |
| 433-777, gnl|Hg17|chr1 (27623779-27623434) | |
| 433-777, gnl|Mm7|chr4 (132378564-132378913) | |
| 434-635, gnl|bosTau2|chr13 (49325955-49325754) | |
| 434-635, gnl|Hg17|chr20 (35464985-35465186) | |
| 434-635, gnl|Mm7|chr2 (157210640-157210841) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |