Ss1.1-Pig1-47C05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGTTGATAGGATAGTTGAAGTCTGTGCAGCACAACCATGTAACAGTCTGAGTACAGG ACTGCAGTGTGAGATGGATCCTGTCTCACAGACACAAGCCTCGGAAACCTTGGCTGTCAG GGGCTATAGTGTTATTGGATGGTATCATTCTCATCCTGCCTTTGATCCTAATCCTTCCTT ACGAGATATTGACACTCAAGCCAAATACCAGAGTTACTTCTCCAGAGGCGGTGCAAAGTT CATTGGAATGATTGTTAGTCCCTATAATCGAAATAATCCTTTACCTTATTCTCAGATTAC CTGCCTTGTTATAAGTGATGAAGTTAGCGCAGATGGCTCTTACCGTTTACCTTACAAATT TGAAGTACAACAGATGTTAGAAGAACCTCGGTGGGGATTAGTATTTGAAAAGACAAGATG GATAATAGAAAAATACAGGCTATCCCGGAGCAGTGTCCCCATGGATAAAATCTTTCGCCG GGATTCTGACCTGACTTGTTTGCAGAAACTTTTGGAGTGTCTGAGGAAAACTCTGAGCAA AGTGACCAATTGCTTCATTGCTGAAGAATTCTTGACTCAAATAGAAAATTTGTTCCTTTC CAATTATAAAAGCAAGCCAGAGAATGGAATGGCTGAAGAGAACACTACTGTGGGGCCCAA GGAATTGTTAATGTGATGATTTTAAAGTAAGACATTTTACTCTTGACACAATAGATCCTG CTTTCAAAGTTATAAAGTTGAAATTATTGCAATTTAGTTAACAGTGGCACAGCTTTGCTT TTAGGTTAGTTCACAGAATTGAAGCTTGCCACAGAAACCGTGTAGCATACGGCAATGATC AGAGTTGTGTGAAGCTGTGTCCCCCTTAGCTGGCAGTCCTCTAGGGCCAGTAAGCAGGGT GTGGACTGAAAGGTGGCCTCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGTTGATAGGATAGTTGAAGTCTGTGCAGCACAACCATGTAACAGTCTGAGTACAGG ACTGCAGTGTGAGATGGATCCTGTCTCACAGACACAAGCCTCGGAAACCTTGGCTGTCAG GGGCTATAGTGTTATTGGATGGTATCATTCTCATCCTGCCTTTGATCCTAATCCTTCCTT ACGAGATATTGACACTCAAGCCAAATACCAGAGTTACTTCTCCAGAGGCGGTGCAAAGTT CATTGGAATGATTGTTAGTCCCTATAATCGAAATAATCCTTTACCTTATTCTCAGATTAC CTGCCTTGTTATAAGTGATGAAGTTAGCGCAGATGGCTCTTACCGTTTACCTTACAAATT TGAAGTACAACAGATGTTAGAAGAACCTCGGTGGGGATTAGTATTTGAAAAGACAAGATG GATAATAGAAAAATACAGGCTATCCCGGAGCAGTGTCCCCATGGATAAAATCTTTCGCCG GGATTCTGACCTGACTTGTTTGCAGAAACTTTTGGAGTGTCTGAGGAAAACTCTGAGCAA AGTGACCAATTGCTTCATTGCTGAAGAATTCTTGACTCAAATAGAAAATTTGTTCCTTTC CAATTATAAAAGCAAGCCAGAGAATGGAATGGCTGAAGAGAACACTACTGTGGGGCCCAA GGAATTGTTAATGTGATGATTTTAAAGTAAGACATTTTACTCTTGACACAATAGATCCTG CTTTCAAAGTTATAAAGTTGAAATTATTGCAATTTAGTTAACAGTGGCACAGCTTTGCTT TTAGGTTAGTTCACAGAATTGAAGCTTGCCACAGAAACCGTGTAGCATACGGCAATGATC AGAGTTGTGTGAAGCTGTGTCCCCCTTAGCTGGCAGTCCTCTAGGGCCAGTAAGCAGGGT GTGGACTGAAAGGTGGCCTCACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 23-182, + strand, RNAz p=0.927663 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 23-182, + strand, RNAz p=0.927663 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 23-211, gnl|bosTau2|chr3 (65348916-65348728) | |
| 23-211, gnl|Hg17|chr1 (58844919-58844731) | |
| 23-211, gnl|Mm7|chr4 (94344968-94344780) | |
| 345-450, gnl|bosTau2|chr3 (65342141-65342036) | |
| 345-450, gnl|canFam2|chr5 (54074704-54074542) | |
| 345-450, gnl|danRer3|chr20 (8966224-8966373) | |
| 345-450, gnl|dasNov1|scaffold_8162 (47317-47475) | |
| 345-450, gnl|echTel1|scaffold_309677 (82126-81969) | |
| 345-450, gnl|galGal2|chr8 (26572429-26572565) | |
| 345-450, gnl|hg17|chr1 (58839085-58839243) | |
| 345-450, gnl|Hg17|chr1 (58839204-58839099) | |
| 345-450, gnl|loxAfr1|scaffold_1819 (63378-63221) | |
| 345-450, gnl|mm7|chr4 (94340921-94341080) | |
| 345-450, gnl|Mm7|chr4 (94341040-94340935) | |
| 345-450, gnl|monDom2|scaffold_40 (16814658-16814506) | |
| 345-450, gnl|oryCun1|scaffold_184692 (7634-7476) | |
| 345-450, gnl|panTro1|chr1 (57172943-57173101) | |
| 345-450, gnl|rheMac2|chr1 (61512940-61513098) | |
| 345-450, gnl|rn3|chr5 (115256496-115256654) | |
| 509-827, gnl|bosTau2|chr3 (65340791-65340478) | |
| 509-827, gnl|Hg17|chr1 (58837848-58837539) | |
| 509-827, gnl|Mm7|chr4 (94339729-94339444) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-211, gnl|bosTau2|chr3 (65348916-65348728) | |
| 23-211, gnl|Hg17|chr1 (58844919-58844731) | |
| 23-211, gnl|Mm7|chr4 (94344968-94344780) | |
| 345-450, gnl|bosTau2|chr3 (65342141-65342036) | |
| 345-450, gnl|canFam2|chr5 (54074704-54074542) | |
| 345-450, gnl|danRer3|chr20 (8966224-8966373) | |
| 345-450, gnl|dasNov1|scaffold_8162 (47317-47475) | |
| 345-450, gnl|echTel1|scaffold_309677 (82126-81969) | |
| 345-450, gnl|galGal2|chr8 (26572429-26572565) | |
| 345-450, gnl|hg17|chr1 (58839085-58839243) | |
| 345-450, gnl|Hg17|chr1 (58839204-58839099) | |
| 345-450, gnl|loxAfr1|scaffold_1819 (63378-63221) | |
| 345-450, gnl|mm7|chr4 (94340921-94341080) | |
| 345-450, gnl|Mm7|chr4 (94341040-94340935) | |
| 345-450, gnl|monDom2|scaffold_40 (16814658-16814506) | |
| 345-450, gnl|oryCun1|scaffold_184692 (7634-7476) | |
| 345-450, gnl|panTro1|chr1 (57172943-57173101) | |
| 345-450, gnl|rheMac2|chr1 (61512940-61513098) | |
| 345-450, gnl|rn3|chr5 (115256496-115256654) | |
| 509-827, gnl|bosTau2|chr3 (65340791-65340478) | |
| 509-827, gnl|Hg17|chr1 (58837848-58837539) | |
| 509-827, gnl|Mm7|chr4 (94339729-94339444) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |