Non-Coding RNA Search

Ss1.1-Pig1-47C19.5

Sequence:


               
               TTGGTGCTCTGAAGAAAGCACAGCGGCAGAAAAAACTCCGGCTGTGCCTGCTGCTTTGAC
ACATCCTGGTGGGGCACACGGCCCTCAGGATTGAACTGACAGGGCCTGGGTCCCCAGGCC
CAGACTGCTTCCCAGACGCTGCCCCTCCCCAGCTCTTGAAGAGCACTTGGAATCTGGTGT
CTCCAGTGCCTGGTGTCTGGAGCCTGTGGCTAGGTTCTTAGAACTTTCTGGAACTCTCTC
CTTTCCCAGCTGGGGCTCTGGCCATGAGCCCCACTCTGGACTCATGGGAGCTGTGGCCTG
TGTGGTGGTGATGGGTAAGGAGGCTGGACTCCGAGTCCCTCTGTACCCTGGAACCAGCTC
TTGTCCCCAGGACTCAGGAGTGCCCGCATCACAACCTCCCCCCAGCTGTGTGTTCCCCTC
TGCACACCCAGTAGGTCCTCAAAGGCTATGCTTGAAGTGAAAAATGACGTCTGGTATGTG
GGTAAATGAGAAACTTGGCAGCATTCCACATGGCCCCCAAGTGCTTTCCCAAGTCACCCA
CCTCCCTGGACTCCTGAGATAGGCATGGCTGCATCCTTCAGCTTCTGGCTTCCTCCTCCT
AGGAATCCAGGCTACCGCCACGATGGGACTGGGGCCTATCAGAAGAACACAGGCACCAGC
TCCCTCCTGCCCTTCCTCCTCCACGCCTCACAGAAGACTTCAGTCTCAGCCTTTGGCTTG
GCTGCCACCTCTCCAGAGCTGGGCATATACAAAGGCAAAAGGAACTTCCCAAAGAGCAAA
AAGTATTTCCTGGACAGTCCACCTGACCCCTGCTCAGCGTCTCCTCCCCTGCAACCCCTC
TTCTCCAACTACTTGCCAGATGAAAAGGGACATCAGCTCCAAGTGATCTTGGGCAAGTCA
GGCTCTCTAGGACAGTTTCGCTACCTGCAGCAGGACGGCACTGGCTCATTAACTAGTCAT
CAAGCTCTCCACTGTCCCTCCCAGGCTCCACTTCTGTCAAGATAGGGAGATCTGAAACCA
AGGCCATCCTGGCGCCCTTCGTTTACAGACTTGATCAACACCCAGCACACATTCTCTGAA
TCTCCTGAAAGGTCTGAGGTCACGGGCCCAGGAGTTTTTAAACAAGTGCCCCAGGTGATC
CTGATGCCCCAGAGATTGAGGGCTGGTGGCTGCCGAGTTAGCTCAGGAATCAGTGCTAAG
AGGAGGTAACAGCTTCAGGGGCTCCTGCCTCAGCCCCTCCTTTGCCCAGTGCGTTGGTCC
ACTGGGCCTGAGAAAGAGACTTCCAAAGTCCAGCCCACCCTACCTAGGTTCCCCAAGGCC
TTGCGGACAAACAGTAGTCTAGGACAGAGGTCCACAAACAACTGTGGGCCAAATCTGGCC
ACCTATTTTTGTAAATAAAAGTTTTATTGAAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTGCTCTGAAGAAAGCACAGCGGCAGAAAAAACTCCGGCTGTGCCTGCTGCTTTGAC
ACATCCTGGTGGGGCACACGGCCCTCAGGATTGAACTGACAGGGCCTGGGTCCCCAGGCC
CAGACTGCTTCCCAGACGCTGCCCCTCCCCAGCTCTTGAAGAGCACTTGGAATCTGGTGT
CTCCAGTGCCTGGTGTCTGGAGCCTGTGGCTAGGTTCTTAGAACTTTCTGGAACTCTCTC
CTTTCCCAGCTGGGGCTCTGGCCATGAGCCCCACTCTGGACTCATGGGAGCTGTGGCCTG
TGTGGTGGTGATGGGTAAGGAGGCTGGACTCCGAGTCCCTCTGTACCCTGGAACCAGCTC
TTGTCCCCAGGACTCAGGAGTGCCCGCATCACAACCTCCCCCCAGCTGTGTGTTCCCCTC
TGCACACCCAGTAGGTCCTCAAAGGCTATGCTTGAAGTGAAAAATGACGTCTGGTATGTG
GGTAAATGAGAAACTTGGCAGCATTCCACATGGCCCCCAAGTGCTTTCCCAAGTCACCCA
CCTCCCTGGACTCCTGAGATAGGCATGGCTGCATCCTTCAGCTTCTGGCTTCCTCCTCCT
AGGAATCCAGGCTACCGCCACGATGGGACTGGGGCCTATCAGAAGAACACAGGCACCAGC
TCCCTCCTGCCCTTCCTCCTCCACGCCTCACAGAAGACTTCAGTCTCAGCCTTTGGCTTG
GCTGCCACCTCTCCAGAGCTGGGCATATACAAAGGCAAAAGGAACTTCCCAAAGAGCAAA
AAGTATTTCCTGGACAGTCCACCTGACCCCTGCTCAGCGTCTCCTCCCCTGCAACCCCTC
TTCTCCAACTACTTGCCAGATGAAAAGGGACATCAGCTCCAAGTGATCTTGGGCAAGTCA
GGCTCTCTAGGACAGTTTCGCTACCTGCAGCAGGACGGCACTGGCTCATTAACTAGTCAT
CAAGCTCTCCACTGTCCCTCCCAGGCTCCACTTCTGTCAAGATAGGGAGATCTGAAACCA
AGGCCATCCTGGCGCCCTTCGTTTACAGACTTGATCAACACCCAGCACACATTCTCTGAA
TCTCCTGAAAGGTCTGAGGTCACGGGCCCAGGAGTTTTTAAACAAGTGCCCCAGGTGATC
CTGATGCCCCAGAGATTGAGGGCTGGTGGCTGCCGAGTTAGCTCAGGAATCAGTGCTAAG
AGGAGGTAACAGCTTCAGGGGCTCCTGCCTCAGCCCCTCCTTTGCCCAGTGCGTTGGTCC
ACTGGGCCTGAGAAAGAGACTTCCAAAGTCCAGCCCACCCTACCTAGGTTCCCCAAGGCC
TTGCGGACAAACAGTAGTCTAGGACAGAGGTCCACAAACAACTGTGGGCCAAATCTGGCC
ACCTATTTTTGTAAATAAAAGTTTTATTGAAACACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-122, - strand, RNAz p=0.875868
               

               
               162-281, + strand, RNAz p=0.788986

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, - strand, RNAz p=0.875868
               

               
               162-281, + strand, RNAz p=0.788986

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_019034, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_019034, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-1323, gnl|bosTau2|chr17 (28328031-28329340)
               

               
               4-1323, gnl|Hg17|chr12 (120680179-120678530)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1323, gnl|bosTau2|chr17 (28328031-28329340)
               

               
               4-1323, gnl|Hg17|chr12 (120680179-120678530)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ill (0.351185)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	4-122, - strand, RNAz p=0.875868
	162-281, + strand, RNAz p=0.788986

	4-1323, gnl\|bosTau2\|chr17 (28328031-28329340)
	4-1323, gnl\|Hg17\|chr12 (120680179-120678530)

	ill (0.351185)
	pla (0.267344)
	fty (0.17584)
	fbs (0.175346)
	csp (0.161186)
	eli (0.151814)
	nmm (0.132802)
	cbl (0.114797)
	nbm (0.0993246)
	eje (0.0988338)