Non-Coding RNA Search

Ss1.1-Pig1-47E04.5

Sequence:


               
               ACTTATTGTCGATACTGAACTTCAGCACCTGGCTGAGGTAGGGTCTGTTAGGTTTTCCCA
CTGTAAAGTAATACATTTTTAAAGAGGCTACATTAAGGTAAATTTATGAGCATTACACTA
AAAGAAAAAAATATTCGGAGCAGATTCCTCAGCACTGCTATTAGTTTCCATTAAAAGAAT
GCTAACAAATACTANCTGAAGAAAAAAAATATAAAATGAACTGGAACGTTGAAGTGGGAA
AATAAAACTCCAAAATAGTGTTAGCCTGAATATTCACTTAATGGAGGTGAAAGTGAACTT
TTTCCCTGGAACTATCTTCATCCTCTATCCCCTTGTGTAGTGAAGATTTTAGTGGTACTA
GTGGTCAGAGGTAACCTAAATCAATGATCATTTTGCTGAGTACTTTTCTATATTGCCGTC
CACTGAACAATGAACACTGAATACTGGAATAATGTAAAAAACCTGAATTTTCCCTCTTGC
TTTAACCTATTTGTCATAAATAATGTTTATTGTATATGATTTTAGGATGTTGTTAAATAT
TAAAAATAATTTCAATGTGCTTGGTTCTGTAAAATTTATCATATTGAACGTGTCTAATTT
TTTGCTACCATGTTCGCTATACTTAATAATCTATATCCATATATTGGACTTCACCAATAT
TTATTAGTGGACCACAGAGACTTTTTGAATGCATGAATACAACTTGAGACACCATCTTTG
GTTATTCTGAAATGCCAGAATATCTGTAGGTACTTACAAGTTGAATAGATAATCCAGATT
ATTTTTCTTCCACTTAAATTGTTTTGGATTTTTATGCCCCCTATTTTATTATTTACTTAT
GTACACTAACAGACTTCCTGAAAATGCTAGAATTTTCAACTTGTAATGGAATTTGAGCAT
GACAGTAATGTAAGAAAATTCAAAAATCTCAAACTAAGTATATCTATTTGAGTTTTCAAA
GTAAGTCAAACTACAGCTGTTTTCATTTGACTATATTGTGGAAATCTATAGATATTATTG
TAAAATGCACATGCATTACACTGACTTCTTAAAAATGTTTTGAATTAATAAAGAGATCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTATTGTCGATACTGAACTTCAGCACCTGGCTGAGGTAGGGTCTGTTAGGTTTTCCCA
CTGTAAAGTAATACATTTTTAAAGAGGCTACATTAAGGTAAATTTATGAGCATTACACTA
AAAGAAAAAAATATTCGGAGCAGATTCCTCAGCACTGCTATTAGTTTCCATTAAAAGAAT
GCTAACAAATACTANCTGAAGAAAAAAAATATAAAATGAACTGGAACGTTGAAGTGGGAA
AATAAAACTCCAAAATAGTGTTAGCCTGAATATTCACTTAATGGAGGTGAAAGTGAACTT
TTTCCCTGGAACTATCTTCATCCTCTATCCCCTTGTGTAGTGAAGATTTTAGTGGTACTA
GTGGTCAGAGGTAACCTAAATCAATGATCATTTTGCTGAGTACTTTTCTATATTGCCGTC
CACTGAACAATGAACACTGAATACTGGAATAATGTAAAAAACCTGAATTTTCCCTCTTGC
TTTAACCTATTTGTCATAAATAATGTTTATTGTATATGATTTTAGGATGTTGTTAAATAT
TAAAAATAATTTCAATGTGCTTGGTTCTGTAAAATTTATCATATTGAACGTGTCTAATTT
TTTGCTACCATGTTCGCTATACTTAATAATCTATATCCATATATTGGACTTCACCAATAT
TTATTAGTGGACCACAGAGACTTTTTGAATGCATGAATACAACTTGAGACACCATCTTTG
GTTATTCTGAAATGCCAGAATATCTGTAGGTACTTACAAGTTGAATAGATAATCCAGATT
ATTTTTCTTCCACTTAAATTGTTTTGGATTTTTATGCCCCCTATTTTATTATTTACTTAT
GTACACTAACAGACTTCCTGAAAATGCTAGAATTTTCAACTTGTAATGGAATTTGAGCAT
GACAGTAATGTAAGAAAATTCAAAAATCTCAAACTAAGTATATCTATTTGAGTTTTCAAA
GTAAGTCAAACTACAGCTGTTTTCATTTGACTATATTGTGGAAATCTATAGATATTATTG
TAAAATGCACATGCATTACACTGACTTCTTAAAAATGTTTTGAATTAATAAAGAGATCAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1080, gnl|bosTau2|chr9 (50947801-50946709)
               

               
               1-1080, gnl|Hg17|chr6 (153418815-153417715)
               

               
               1-1080, gnl|Mm7|chr10 (4519921-4520991)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1080, gnl|bosTau2|chr9 (50947801-50946709)
               

               
               1-1080, gnl|Hg17|chr6 (153418815-153417715)
               

               
               1-1080, gnl|Mm7|chr10 (4519921-4520991)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ecc (0.115035)

	1-1080, gnl\|bosTau2\|chr9 (50947801-50946709)
	1-1080, gnl\|Hg17\|chr6 (153418815-153417715)
	1-1080, gnl\|Mm7\|chr10 (4519921-4520991)