Ss1.1-Pig1-47F15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCCTCGGCCACAGAGGAGACGCCAAATCGGCACATGACGGAGTCGGTGTCGCCGTACA CCACCTTGGCGCTGGTGCCGTAGCCGTTCTCCACCGTGTACTTGGACTCCACCAGCTGCT TTGTCTTCTCGATCATCTGGCGCCCGAACCCAGTGACGCTCTGCGAGATCTCCAGGCATG GCAGCTTGCCCACTTGGGCGCCAGTGAAGCCGTACACAGAGTTGGCGCTCACTTTTAGTG CCAGCTGCCGCCCATCCAAGACCTGCCGCCTCAGGGGGTCTGTCTCTTTGGCCAGCTCAG CCTTGGCCCTCTTCCGGGCGCTGAGCAGGTTTTCCAGGATCTGGGGCAGCAGCCCCTTCC GCACCGACGTCTTCACGAACTCGTCCCCCGTGGGCGTCTTGATGAACTGATCCGCGGTCA GCCCCAGTTTCTGGGCAGCCCCGGGCCGTAGCAGCGTGGTGTAACACAGGTTGTGGGCCA TCATGATGGACGGGTACAGCGAGGAGAAGTCCAGGGTGGTGATGGGGACATCGTAGTACC CTTTCAGGGGCTCAATGACAGTGGCTCCCGTGTAGTCCTCGCCACCCTCCGTCTTCACCA CGGGCATCAGCAGCCCCTCACGCATGGCCTGCCGCAGCAGCTGGGACACGACCTTGACCT GCTGGCCTCGGCTGAGCAGGTAGCCGAGGGGCACGCCGGTGACCCGGGCCATCTCCATGG CGTTCACCAGCACCATGAGCCGCTCCAGCAGCCGCAGCGGCAGGAAGGCGTCCTTGAGGC AGTACACGGCCAGCCGGCGGCGCGTCTGGTCGTTCCCGTTCTGCAGGTCGGTGATGATGC TGTGCTGCACGTCCTCCTTCTGCTCACCCAGGAAGTGGAAGCTCACGGCGTTGAGCGTGT AGGACCGGAGCTTGTACTCGCGCAACAGCACCTGGAGCATGTCCATCTGCACGCGGCCCA CCATGCTGACCACCTTGCTGTCTCGCCGGCCCGTCTGCTTGGACTGGAAGGACGAGTCCC GGATGTTGGAGCGGAGGCCAGACACGCGGCCCAGGAAGGGGAAGGTCTGCACCTTGAGGG TCTGGGCGCGGGAGATGAGGTATGGAAGGTCGAAGTTCTGGATGTTGTAGCCGGTGATCA CGTCGGGGTCCATGACGCGGATGAAGTTCCCTCCATCCCGCTTCAAACAGCGTTTCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCCTCGGCCACAGAGGAGACGCCAAATCGGCACATGACGGAGTCGGTGTCGCCGTACA CCACCTTGGCGCTGGTGCCGTAGCCGTTCTCCACCGTGTACTTGGACTCCACCAGCTGCT TTGTCTTCTCGATCATCTGGCGCCCGAACCCAGTGACGCTCTGCGAGATCTCCAGGCATG GCAGCTTGCCCACTTGGGCGCCAGTGAAGCCGTACACAGAGTTGGCGCTCACTTTTAGTG CCAGCTGCCGCCCATCCAAGACCTGCCGCCTCAGGGGGTCTGTCTCTTTGGCCAGCTCAG CCTTGGCCCTCTTCCGGGCGCTGAGCAGGTTTTCCAGGATCTGGGGCAGCAGCCCCTTCC GCACCGACGTCTTCACGAACTCGTCCCCCGTGGGCGTCTTGATGAACTGATCCGCGGTCA GCCCCAGTTTCTGGGCAGCCCCGGGCCGTAGCAGCGTGGTGTAACACAGGTTGTGGGCCA TCATGATGGACGGGTACAGCGAGGAGAAGTCCAGGGTGGTGATGGGGACATCGTAGTACC CTTTCAGGGGCTCAATGACAGTGGCTCCCGTGTAGTCCTCGCCACCCTCCGTCTTCACCA CGGGCATCAGCAGCCCCTCACGCATGGCCTGCCGCAGCAGCTGGGACACGACCTTGACCT GCTGGCCTCGGCTGAGCAGGTAGCCGAGGGGCACGCCGGTGACCCGGGCCATCTCCATGG CGTTCACCAGCACCATGAGCCGCTCCAGCAGCCGCAGCGGCAGGAAGGCGTCCTTGAGGC AGTACACGGCCAGCCGGCGGCGCGTCTGGTCGTTCCCGTTCTGCAGGTCGGTGATGATGC TGTGCTGCACGTCCTCCTTCTGCTCACCCAGGAAGTGGAAGCTCACGGCGTTGAGCGTGT AGGACCGGAGCTTGTACTCGCGCAACAGCACCTGGAGCATGTCCATCTGCACGCGGCCCA CCATGCTGACCACCTTGCTGTCTCGCCGGCCCGTCTGCTTGGACTGGAAGGACGAGTCCC GGATGTTGGAGCGGAGGCCAGACACGCGGCCCAGGAAGGGGAAGGTCTGCACCTTGAGGG TCTGGGCGCGGGAGATGAGGTATGGAAGGTCGAAGTTCTGGATGTTGTAGCCGGTGATCA CGTCGGGGTCCATGACGCGGATGAAGTTCCCTCCATCCCGCTTCAAACAGCGTTTCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 161-310, - strand, RNAz p=0.991031 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 161-310, - strand, RNAz p=0.991031 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 161-310, gnl|bosTau2|chr18 (49243960-49243811) | |
| 161-310, gnl|canFam2|chr1 (109192600-109192416) | |
| 161-310, gnl|danRer3|chr3 (6607417-6607262) | |
| 161-310, gnl|fr1|chrUn (165496898-165496742) | |
| 161-310, gnl|hg17|chr19 (55604587-55604769) | |
| 161-310, gnl|Hg17|chr19 (55604735-55604586) | |
| 161-310, gnl|mm7|chr7 (40712280-40712100) | |
| 161-310, gnl|Mm7|chr7 (40712130-40712279) | |
| 161-310, gnl|panTro1|chr20 (52911733-52911915) | |
| 161-310, gnl|rheMac2|chr19 (56614352-56614534) | |
| 161-310, gnl|rn3|chr1 (95093941-95093759) | |
| 161-310, gnl|tetNig1|chrUn_random (40387510-40387686) | |
| 161-310, gnl|xenTro1|scaffold_1088 (322938-322784) | |
| 422-540, gnl|bosTau2|chr18 (49243231-49243113) | |
| 422-540, gnl|canFam2|chr1 (109193339-109193217) | |
| 422-540, gnl|danRer3|chr3 (6610557-6610435) | |
| 422-540, gnl|dasNov1|scaffold_66691 (11485-11602) | |
| 422-540, gnl|echTel1|scaffold_259921 (2708-2586) | |
| 422-540, gnl|fr1|chrUn (165497334-165497213) | |
| 422-540, gnl|hg17|chr19 (55603852-55603974) | |
| 422-540, gnl|Hg17|chr19 (55603971-55603853) | |
| 422-540, gnl|mm7|chr7 (40712969-40712847) | |
| 422-540, gnl|Mm7|chr7 (40712848-40712966) | |
| 422-540, gnl|panTro1|chr20 (52910998-52911120) | |
| 422-540, gnl|rheMac2|chr19 (56613615-56613737) | |
| 422-540, gnl|rn3|chr1 (95094704-95094582) | |
| 422-540, gnl|tetNig1|chrUn_random (40387056-40387180) | |
| 422-540, gnl|xenTro1|scaffold_1088 (323848-323747) | |
| 625-823, gnl|bosTau2|chr18 (49242843-49242645) | |
| 625-823, gnl|canFam2|chr1 (109193868-109193638) | |
| 625-823, gnl|danRer3|chr3 (6613384-6613168) | |
| 625-823, gnl|dasNov1|scaffold_66691 (11219-11432) | |
| 625-823, gnl|echTel1|scaffold_259921 (3290-3066) | |
| 625-823, gnl|fr1|chrUn (165497778-165497573) | |
| 625-823, gnl|hg17|chr19 (55602050-55602281) | |
| 625-823, gnl|Hg17|chr19 (55602247-55602049) | |
| 625-823, gnl|mm7|chr7 (40713490-40713271) | |
| 625-823, gnl|Mm7|chr7 (40713291-40713489) | |
| 625-823, gnl|panTro1|chr20 (52909019-52909250) | |
| 625-823, gnl|rheMac2|chr19 (56611522-56611753) | |
| 625-823, gnl|rn3|chr1 (95095226-95095008) | |
| 625-823, gnl|tetNig1|chrUn_random (40386622-40386827) | |
| 625-823, gnl|xenTro1|scaffold_1088 (325791-325595) | |
| 920-1079, gnl|bosTau2|chr18 (49241923-49241764) | |
| 920-1079, gnl|Hg17|chr19 (55601403-55601245) | |
| 920-1079, gnl|Mm7|chr7 (40713878-40714031) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-310, gnl|bosTau2|chr18 (49243960-49243811) | |
| 161-310, gnl|canFam2|chr1 (109192600-109192416) | |
| 161-310, gnl|danRer3|chr3 (6607417-6607262) | |
| 161-310, gnl|fr1|chrUn (165496898-165496742) | |
| 161-310, gnl|hg17|chr19 (55604587-55604769) | |
| 161-310, gnl|Hg17|chr19 (55604735-55604586) | |
| 161-310, gnl|mm7|chr7 (40712280-40712100) | |
| 161-310, gnl|Mm7|chr7 (40712130-40712279) | |
| 161-310, gnl|panTro1|chr20 (52911733-52911915) | |
| 161-310, gnl|rheMac2|chr19 (56614352-56614534) | |
| 161-310, gnl|rn3|chr1 (95093941-95093759) | |
| 161-310, gnl|tetNig1|chrUn_random (40387510-40387686) | |
| 161-310, gnl|xenTro1|scaffold_1088 (322938-322784) | |
| 422-540, gnl|bosTau2|chr18 (49243231-49243113) | |
| 422-540, gnl|canFam2|chr1 (109193339-109193217) | |
| 422-540, gnl|danRer3|chr3 (6610557-6610435) | |
| 422-540, gnl|dasNov1|scaffold_66691 (11485-11602) | |
| 422-540, gnl|echTel1|scaffold_259921 (2708-2586) | |
| 422-540, gnl|fr1|chrUn (165497334-165497213) | |
| 422-540, gnl|hg17|chr19 (55603852-55603974) | |
| 422-540, gnl|Hg17|chr19 (55603971-55603853) | |
| 422-540, gnl|mm7|chr7 (40712969-40712847) | |
| 422-540, gnl|Mm7|chr7 (40712848-40712966) | |
| 422-540, gnl|panTro1|chr20 (52910998-52911120) | |
| 422-540, gnl|rheMac2|chr19 (56613615-56613737) | |
| 422-540, gnl|rn3|chr1 (95094704-95094582) | |
| 422-540, gnl|tetNig1|chrUn_random (40387056-40387180) | |
| 422-540, gnl|xenTro1|scaffold_1088 (323848-323747) | |
| 625-823, gnl|bosTau2|chr18 (49242843-49242645) | |
| 625-823, gnl|canFam2|chr1 (109193868-109193638) | |
| 625-823, gnl|danRer3|chr3 (6613384-6613168) | |
| 625-823, gnl|dasNov1|scaffold_66691 (11219-11432) | |
| 625-823, gnl|echTel1|scaffold_259921 (3290-3066) | |
| 625-823, gnl|fr1|chrUn (165497778-165497573) | |
| 625-823, gnl|hg17|chr19 (55602050-55602281) | |
| 625-823, gnl|Hg17|chr19 (55602247-55602049) | |
| 625-823, gnl|mm7|chr7 (40713490-40713271) | |
| 625-823, gnl|Mm7|chr7 (40713291-40713489) | |
| 625-823, gnl|panTro1|chr20 (52909019-52909250) | |
| 625-823, gnl|rheMac2|chr19 (56611522-56611753) | |
| 625-823, gnl|rn3|chr1 (95095226-95095008) | |
| 625-823, gnl|tetNig1|chrUn_random (40386622-40386827) | |
| 625-823, gnl|xenTro1|scaffold_1088 (325791-325595) | |
| 920-1079, gnl|bosTau2|chr18 (49241923-49241764) | |
| 920-1079, gnl|Hg17|chr19 (55601403-55601245) | |
| 920-1079, gnl|Mm7|chr7 (40713878-40714031) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |