Non-Coding RNA Search

Ss1.1-Pig1-47K09.5

Sequence:


               
               ACTCGTGAGACCGCTGACTCCTCTGTTCACAGGTAATGCCCAGAACACCCTGGCCCAGCC
CACTGTGTGGCTGACCATCGTGCTCACCACAGTCGTCTGCATCATGCCTGTGGTCGCCTT
TCGATTCCTCAGGCTGAACCTGAAGCCCGATCTCTCGGACACGGTCCGCTATACCCAGCT
GGTGAGGAAGAAGCAGAAGGCCCAGCACCGCTGCATGCGGCGGGTGGGCCGCACGGGTTC
CCGGCGCTCCGGCTACGCCTTCTCCCACCAGGAGGGCTTCGGGGAGCTCATCATGTCTGG
CAAAAACATGCGGCTTAGCTCCCTGGCGCTCTTCAGCTTCACCACCCGCTCCAGCTCCAG
CTGGATTGAGAGCCTGCGCAGGAAGAAGAGTGACAGCGCCAGCAGCCCCAGTGCAGGGGC
TGACAAGCCCCTCAAGGGGTAAAGGCTGGGACAGGGACGCCCCGTGCTGGTGATCAGCGC
ACGTGGGGCTGGCCGGCCACCGAGGGGACAGCGTCTCGGAACTGCGGGTCCTCTTTCCTT
GCCTAGGTCCTCATCCCGTCTCCCCTGTAGACTCTGTCCTGCTGGTCCCTCTAGGAGCCA
CGGGTGCGTCCCCAGCTGAGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGTGAGACCGCTGACTCCTCTGTTCACAGGTAATGCCCAGAACACCCTGGCCCAGCC
CACTGTGTGGCTGACCATCGTGCTCACCACAGTCGTCTGCATCATGCCTGTGGTCGCCTT
TCGATTCCTCAGGCTGAACCTGAAGCCCGATCTCTCGGACACGGTCCGCTATACCCAGCT
GGTGAGGAAGAAGCAGAAGGCCCAGCACCGCTGCATGCGGCGGGTGGGCCGCACGGGTTC
CCGGCGCTCCGGCTACGCCTTCTCCCACCAGGAGGGCTTCGGGGAGCTCATCATGTCTGG
CAAAAACATGCGGCTTAGCTCCCTGGCGCTCTTCAGCTTCACCACCCGCTCCAGCTCCAG
CTGGATTGAGAGCCTGCGCAGGAAGAAGAGTGACAGCGCCAGCAGCCCCAGTGCAGGGGC
TGACAAGCCCCTCAAGGGGTAAAGGCTGGGACAGGGACGCCCCGTGCTGGTGATCAGCGC
ACGTGGGGCTGGCCGGCCACCGAGGGGACAGCGTCTCGGAACTGCGGGTCCTCTTTCCTT
GCCTAGGTCCTCATCCCGTCTCCCCTGTAGACTCTGTCCTGCTGGTCCCTCTAGGAGCCA
CGGGTGCGTCCCCAGCTGAGGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20988041|gb|AAH30288.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20988041|gb|AAH30288.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-516, - strand, RNAz p=0.969787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-516, - strand, RNAz p=0.969787

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               163-598, gnl|bosTau2|chr3 (8427968-8428412)
               

               
               163-598, gnl|Hg17|chr1 (151134388-151134821)
               

               
               163-598, gnl|Mm7|chr3 (90067819-90067426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-598, gnl|bosTau2|chr3 (8427968-8428412)
               

               
               163-598, gnl|Hg17|chr1 (151134388-151134821)
               

               
               163-598, gnl|Mm7|chr3 (90067819-90067426)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	163-598, gnl\|bosTau2\|chr3 (8427968-8428412)
	163-598, gnl\|Hg17\|chr1 (151134388-151134821)
	163-598, gnl\|Mm7\|chr3 (90067819-90067426)