Non-Coding RNA Search

Ss1.1-Pig1-47P22.5

Sequence:


               
               TCACAACATACTCAGCTTTTCGGTTTTGTTCTCATAACATTTTTTCATGAAAAAATGGTG
AACTTATTCTGTTGACAGACTGGTGGTATACGATCGGAAATGTTCGATTCTATCTAAAAC
TAAATTTATGGCATACAACTAAACTTTATGATGCAATTTACTATTAGTATTGCATTTAAT
TCCAAGAGAGTTGTCATAAATTGATTCAGACTAGTATTATGTACATTTTAGAATGTACAT
GTAAATACTGTGATAAAAATCATGTGGTTTTATTAGAGATCTACTGTAATGTGTCTTCAA
GGGCACAAGAAAATAATGTTCACAAAAAATGTGCTAACATTTTATTGCTATCAGCTGTTG
CAACGCTGATATATTTCTAGTTCAGTGAAATAATTTGTAGCAACCTTGCTCTAAGGTTTT
ATGGTCTGATAATAAAGCACTTGCATGAGTATAGTAAGTCATGTTATTTTGTTCCAGTTA
AAAGCCCTGCTAAGTGCATGTTACACCTCATAGAATGTATACTAGCACACACTATCCAGT
AAAGCATAAATTAGAATTTAATTTGATGTGCAGATAGTCCAGTTTTTAAGCGTTGAGCTA
TTTTTTAAAAAACGCAGGACAGATAAGTTAATGCAAAATTCTCAGTAATAGAGATAAGTG
GAAATACTGCAAAATAAATTGTAGACAAAATAATGGCATCTAGCTGAAGATGGTGCATGA
TCTCTGTATATATAGCACATGTGAATAAAAGAAAAGCAATGGTATATTCTAATTTTTAAA
AAAACAACCTATCAGAAAGAATTTTACCCCCAAGATTGTTTCAATTTTCTCAATATTGAC
TGTTTTGAAATTTGCTACTGCCTTCTGAAACCATTTCAGAAAGATTTCCTAATTGTTCAA
CATGATGCACTGATCAGTTTTTGTTGCAGCATTTCCATACTCTCATGGTGAACTCTTATT
CGTCACGACTTGCATAAATATTGTTTACAGAATGTGACTTGGTTTAGTCCTCTTAAGTGC
TGTAGCAAACTGTGGTTCGAGCAACCTGTGGGAAACGTGTGAGAGGGAAGGGGCTGCGGG
AGGGTGGGAAAAAGCGGTCAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAACATACTCAGCTTTTCGGTTTTGTTCTCATAACATTTTTTCATGAAAAAATGGTG
AACTTATTCTGTTGACAGACTGGTGGTATACGATCGGAAATGTTCGATTCTATCTAAAAC
TAAATTTATGGCATACAACTAAACTTTATGATGCAATTTACTATTAGTATTGCATTTAAT
TCCAAGAGAGTTGTCATAAATTGATTCAGACTAGTATTATGTACATTTTAGAATGTACAT
GTAAATACTGTGATAAAAATCATGTGGTTTTATTAGAGATCTACTGTAATGTGTCTTCAA
GGGCACAAGAAAATAATGTTCACAAAAAATGTGCTAACATTTTATTGCTATCAGCTGTTG
CAACGCTGATATATTTCTAGTTCAGTGAAATAATTTGTAGCAACCTTGCTCTAAGGTTTT
ATGGTCTGATAATAAAGCACTTGCATGAGTATAGTAAGTCATGTTATTTTGTTCCAGTTA
AAAGCCCTGCTAAGTGCATGTTACACCTCATAGAATGTATACTAGCACACACTATCCAGT
AAAGCATAAATTAGAATTTAATTTGATGTGCAGATAGTCCAGTTTTTAAGCGTTGAGCTA
TTTTTTAAAAAACGCAGGACAGATAAGTTAATGCAAAATTCTCAGTAATAGAGATAAGTG
GAAATACTGCAAAATAAATTGTAGACAAAATAATGGCATCTAGCTGAAGATGGTGCATGA
TCTCTGTATATATAGCACATGTGAATAAAAGAAAAGCAATGGTATATTCTAATTTTTAAA
AAAACAACCTATCAGAAAGAATTTTACCCCCAAGATTGTTTCAATTTTCTCAATATTGAC
TGTTTTGAAATTTGCTACTGCCTTCTGAAACCATTTCAGAAAGATTTCCTAATTGTTCAA
CATGATGCACTGATCAGTTTTTGTTGCAGCATTTCCATACTCTCATGGTGAACTCTTATT
CGTCACGACTTGCATAAATATTGTTTACAGAATGTGACTTGGTTTAGTCCTCTTAAGTGC
TGTAGCAAACTGTGGTTCGAGCAACCTGTGGGAAACGTGTGAGAGGGAAGGGGCTGCGGG
AGGGTGGGAAAAAGCGGTCAGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-277, + strand, RNAz p=0.731533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-277, + strand, RNAz p=0.731533

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB097013, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB097013, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1102, gnl|bosTau2|chr5 (4327024-4325943)
               

               
               1-1102, gnl|Hg17|chr12 (75747479-75748576)
               

               
               1-1102, gnl|Mm7|chr10 (110404346-110403290)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1102, gnl|bosTau2|chr5 (4327024-4325943)
               

               
               1-1102, gnl|Hg17|chr12 (75747479-75748576)
               

               
               1-1102, gnl|Mm7|chr10 (110404346-110403290)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               lyg (0.133103)

	1-1102, gnl\|bosTau2\|chr5 (4327024-4325943)
	1-1102, gnl\|Hg17\|chr12 (75747479-75748576)
	1-1102, gnl\|Mm7\|chr10 (110404346-110403290)