Non-Coding RNA Search

Ss1.1-Pig1-48B23.5

Sequence:


               
               GGGATACACCTCCAGAGTTACTTGTGGATGAATCACATTGGCTTCTAAAAATCAGGTGCC
CAGATGACCCAGGACTGTCTCATCTGGAACCTACACCAAGAGATGCAGTCAGCGTCTTAC
AGTAAATGTTCATGGAAGCTAAAAAATTTACCTCCTTTCCTTTTTTCCTTCTCCTTAAGA
TACCAGACAAATCAATCGTAACTTCTATACATATCTGTAAAAAAGTATTTTCTGTTAATT
ATTATTATTTTTACCAATTTATTTTCTCCTACTTTGTCATTAAAATCAAAATGTCTATCT
GGCTCACCATATAGTGTGCTTTGATTGTATTTTGACTTTGACTCTGCCATTTCTGGAATG
TGGGGGAGGAGGGAGACAGAGCTGACTTCTCCAATTGCTATGTTGTATTCCCACCCAATT
TCTTGGGCAGCTGATGGATCTCTGGGAGAAACACAAGAAAGCCTGCTGAAATGGAGAACT
GCTGATACAGGAAGGATTGTTCATCTCTTAGGCTTCCATTTGGATGGGCCTGCCTTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATACACCTCCAGAGTTACTTGTGGATGAATCACATTGGCTTCTAAAAATCAGGTGCC
CAGATGACCCAGGACTGTCTCATCTGGAACCTACACCAAGAGATGCAGTCAGCGTCTTAC
AGTAAATGTTCATGGAAGCTAAAAAATTTACCTCCTTTCCTTTTTTCCTTCTCCTTAAGA
TACCAGACAAATCAATCGTAACTTCTATACATATCTGTAAAAAAGTATTTTCTGTTAATT
ATTATTATTTTTACCAATTTATTTTCTCCTACTTTGTCATTAAAATCAAAATGTCTATCT
GGCTCACCATATAGTGTGCTTTGATTGTATTTTGACTTTGACTCTGCCATTTCTGGAATG
TGGGGGAGGAGGGAGACAGAGCTGACTTCTCCAATTGCTATGTTGTATTCCCACCCAATT
TCTTGGGCAGCTGATGGATCTCTGGGAGAAACACAAGAAAGCCTGCTGAAATGGAGAACT
GCTGATACAGGAAGGATTGTTCATCTCTTAGGCTTCCATTTGGATGGGCCTGCCTTAACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               45-195, - strand, RNAz p=0.998011
               

               
               227-377, - strand, RNAz p=0.726696
               

               
               406-522, - strand, RNAz p=0.663376

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-195, - strand, RNAz p=0.998011
               

               
               227-377, - strand, RNAz p=0.726696
               

               
               406-522, - strand, RNAz p=0.663376

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-540, gnl|bosTau2|chr23 (17196623-17196087)
               

               
               7-540, gnl|Hg17|chr6 (43412868-43412340)
               

               
               7-540, gnl|Mm7|chr17 (44541436-44541951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-540, gnl|bosTau2|chr23 (17196623-17196087)
               

               
               7-540, gnl|Hg17|chr6 (43412868-43412340)
               

               
               7-540, gnl|Mm7|chr17 (44541436-44541951)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	45-195, - strand, RNAz p=0.998011
	227-377, - strand, RNAz p=0.726696
	406-522, - strand, RNAz p=0.663376

	7-540, gnl\|bosTau2\|chr23 (17196623-17196087)
	7-540, gnl\|Hg17\|chr6 (43412868-43412340)
	7-540, gnl\|Mm7\|chr17 (44541436-44541951)