Non-Coding RNA Search

Ss1.1-Pig1-48G16.5

Sequence:


               
               ACCAGGGCTTGGGATCCCGGAAGGGCCAGGGGCTGGGTTAAGTGCCGTCCACGAGGCTCC
GCCCCATTTAAAGCTAGCTTGCTAGGGAGTAGCCCCGCCCCCTGGGGCGCCCTCCGTACG
CTTGCGCAGTGTGCCCAGAGCCGCCATGCCGGAGCCGCGCGGGTCGTCGCCCCTGCGGGT
GAACGCGGCGTTTGCTGCGCGGTACGGCCGCTACCGGGAGCGCGAGGAGCTGCAGCGGCT
CAAAGATCGCTACGGAGACCAGGACGGCAGTGGCGACTCCAGCTCCGAGTCTGACTCCAG
CGATGAGCGCGTGGAATTTGACCCCCAGCAGGAGCGAGACTTTTACAGGACTCTATCCTT
GTTGAAGAAGAAGGATCCCCGGATTTACAAGAAAGATGCCACATTCTATCAGAGAACAGC
ATCTTCCTCGGAGAGCGAGGAGGAGCCGGCAGCTGAGGAGAAGCAAAAGAAGGTTTGTCC
CATGTACCTGAAGGACTACGAGAGGAAGGTCATCTTGGAGAAAGGAGGCAAATATGTTGA
TGAGGAAAATTCAGACGGGGAGACCTCTGATCAGAGGACACATGGGGGACTTGGGGGCAG
GGGTGGGATGAAGCCCATGACTCATCAGAGTTGAGAGGGGAGGAGCCTTGGTGACCCACT
CCCCACCCCATGGTGACAGACAGGCCCTGGGGCACCTATCCTGAAGCCTTCATCCTTTCT
TGCAGCAAATATGTTGATGAGGCAAATTCAGACGGGGAGACCTCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGGCTTGGGATCCCGGAAGGGCCAGGGGCTGGGTTAAGTGCCGTCCACGAGGCTCC
GCCCCATTTAAAGCTAGCTTGCTAGGGAGTAGCCCCGCCCCCTGGGGCGCCCTCCGTACG
CTTGCGCAGTGTGCCCAGAGCCGCCATGCCGGAGCCGCGCGGGTCGTCGCCCCTGCGGGT
GAACGCGGCGTTTGCTGCGCGGTACGGCCGCTACCGGGAGCGCGAGGAGCTGCAGCGGCT
CAAAGATCGCTACGGAGACCAGGACGGCAGTGGCGACTCCAGCTCCGAGTCTGACTCCAG
CGATGAGCGCGTGGAATTTGACCCCCAGCAGGAGCGAGACTTTTACAGGACTCTATCCTT
GTTGAAGAAGAAGGATCCCCGGATTTACAAGAAAGATGCCACATTCTATCAGAGAACAGC
ATCTTCCTCGGAGAGCGAGGAGGAGCCGGCAGCTGAGGAGAAGCAAAAGAAGGTTTGTCC
CATGTACCTGAAGGACTACGAGAGGAAGGTCATCTTGGAGAAAGGAGGCAAATATGTTGA
TGAGGAAAATTCAGACGGGGAGACCTCTGATCAGAGGACACATGGGGGACTTGGGGGCAG
GGGTGGGATGAAGCCCATGACTCATCAGAGTTGAGAGGGGAGGAGCCTTGGTGACCCACT
CCCCACCCCATGGTGACAGACAGGCCCTGGGGCACCTATCCTGAAGCCTTCATCCTTTCT
TGCAGCAAATATGTTGATGAGGCAAATTCAGACGGGGAGACCTCTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-106, + strand, RNAz p=0.748196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-106, + strand, RNAz p=0.748196

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK093879, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK093879, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-239, gnl|bosTau2|chr7 (10926919-10926681)
               

               
               3-239, gnl|Hg17|chr19 (10537820-10537582)
               

               
               3-239, gnl|Mm7|chr9 (21164664-21164418)
               


               
               418-633, gnl|bosTau2|chr7 (10925091-10924879)
               

               
               418-633, gnl|Hg17|chr19 (10534515-10534270)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-239, gnl|bosTau2|chr7 (10926919-10926681)
               

               
               3-239, gnl|Hg17|chr19 (10537820-10537582)
               

               
               3-239, gnl|Mm7|chr9 (21164664-21164418)
               


               
               418-633, gnl|bosTau2|chr7 (10925091-10924879)
               

               
               418-633, gnl|Hg17|chr19 (10534515-10534270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	3-239, gnl\|bosTau2\|chr7 (10926919-10926681)
	3-239, gnl\|Hg17\|chr19 (10537820-10537582)
	3-239, gnl\|Mm7\|chr9 (21164664-21164418)

	418-633, gnl\|bosTau2\|chr7 (10925091-10924879)
	418-633, gnl\|Hg17\|chr19 (10534515-10534270)