Ss1.1-Pig1-48H07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGCTCATTTACCTGATGCGCATGGTGAAGGCGCTGATGGACAACCCCACTCTGTATC TAGAGAAATATGTGCACGAGTTGATCCCAGCTGTGATGACCTGCATCGTGAGCAGACAGC TGTGCCTGCGGCCAGACGTGGACAATCACTGGGCGCTCCGGGACTTTGCCGCCCGCCTGG TGGCCCAGATCTGCAAGCACTTCAGCACAACCACGAACAACATCCAGTCTCGAATCACCA AGACCTTCACCAAGAGCTGGGTGGATGAGAAGACCCCGTGGACAACGCGCTACGGCTCCA TCGCAGGCCTGGCAGAGCTGGGACACGATGTGATTAAGACTCTAATTCTGCCAAGGCTAC AGCAGGAGGGGGAGCGGATCCGCGGGGTCCTGGATGGCCCGGTGCTGAGCAATATTGACC GCATCGGGGCTGACCACGTGCAGAGCCTCCTCCTGAAACACTGTGCCCCGGTTCTGGCAA AGCTGCGCCCGCCACCTGACAACCAAGATGCCTATCGGGCAGAATTTGGGTCCCTCGGGC CCCTCCTCTGCTCCCATGTGGTCAAGGCCCGGGCCCAGGCTGCTCTGCAGGCTCAGCAGG TCAACAGGACCACCCTGACCATCACCCAGCCCCGGCCCACGCTGACCCTCTCACAGGCCC CCCAGCCTGGCCCTCGGACCCCTGGCTTGCTGAAGGTCCCTGGCTCCATCGCACTGCCTG TCCAGACACTGGTGTCTGCACGAGCTGCTGCCCCACCTCAGCCTTCCCCTCCCCCAACCA AGTTTATTGTAATGTCATCGTCCTCCAGCGCCTCATCCACCCAGCAGGTCCTGTCCCTCA GCACCTCGGCCCCCGGCTCAGGCTCTACCACAACCTCGCCCGTCACCACCACCGTCCCGA GCGTGCAGCCCATCGTCAAGCTGGTTTCCACCGCCACGGCCGCGCCCCCCAGCACTGCCC CCTCTGGTCCCGGCAGTGTCCAGAAGTACATTGTGGTCTCTCTTCCCCCCACAGGGGAGG GCAAGGGAGGCGCCACCTCCCATCCTTCTCCAGCCCCTTCCCTGCCCTCCGCCCCCTCCC CGCTTGGGGGCAGCGCCCTCTGTGGGGGGAAGCCCGAAGCGGGGGAGAGCCCCCCTCCCG CCCCGGGGACTCCAAAGGCTAATGGCTCCCAGCCCCCCGGATCTGGCTCCCCTCAGCCTG CGCCTTGATGCTGTCACAGGCCTGCCCACCTTCTCTGCCCCGGACTCACACTCATACACA CACAGGCTCGCGCACGCTAGATGGAAGGAAGGCGTAGCTTCCTCCGCGTGACCTTCTCTT TAGATACTGTACAGCCAGCTCCTCAGAATAAAAGTTTCATTTTTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGCTCATTTACCTGATGCGCATGGTGAAGGCGCTGATGGACAACCCCACTCTGTATC TAGAGAAATATGTGCACGAGTTGATCCCAGCTGTGATGACCTGCATCGTGAGCAGACAGC TGTGCCTGCGGCCAGACGTGGACAATCACTGGGCGCTCCGGGACTTTGCCGCCCGCCTGG TGGCCCAGATCTGCAAGCACTTCAGCACAACCACGAACAACATCCAGTCTCGAATCACCA AGACCTTCACCAAGAGCTGGGTGGATGAGAAGACCCCGTGGACAACGCGCTACGGCTCCA TCGCAGGCCTGGCAGAGCTGGGACACGATGTGATTAAGACTCTAATTCTGCCAAGGCTAC AGCAGGAGGGGGAGCGGATCCGCGGGGTCCTGGATGGCCCGGTGCTGAGCAATATTGACC GCATCGGGGCTGACCACGTGCAGAGCCTCCTCCTGAAACACTGTGCCCCGGTTCTGGCAA AGCTGCGCCCGCCACCTGACAACCAAGATGCCTATCGGGCAGAATTTGGGTCCCTCGGGC CCCTCCTCTGCTCCCATGTGGTCAAGGCCCGGGCCCAGGCTGCTCTGCAGGCTCAGCAGG TCAACAGGACCACCCTGACCATCACCCAGCCCCGGCCCACGCTGACCCTCTCACAGGCCC CCCAGCCTGGCCCTCGGACCCCTGGCTTGCTGAAGGTCCCTGGCTCCATCGCACTGCCTG TCCAGACACTGGTGTCTGCACGAGCTGCTGCCCCACCTCAGCCTTCCCCTCCCCCAACCA AGTTTATTGTAATGTCATCGTCCTCCAGCGCCTCATCCACCCAGCAGGTCCTGTCCCTCA GCACCTCGGCCCCCGGCTCAGGCTCTACCACAACCTCGCCCGTCACCACCACCGTCCCGA GCGTGCAGCCCATCGTCAAGCTGGTTTCCACCGCCACGGCCGCGCCCCCCAGCACTGCCC CCTCTGGTCCCGGCAGTGTCCAGAAGTACATTGTGGTCTCTCTTCCCCCCACAGGGGAGG GCAAGGGAGGCGCCACCTCCCATCCTTCTCCAGCCCCTTCCCTGCCCTCCGCCCCCTCCC CGCTTGGGGGCAGCGCCCTCTGTGGGGGGAAGCCCGAAGCGGGGGAGAGCCCCCCTCCCG CCCCGGGGACTCCAAAGGCTAATGGCTCCCAGCCCCCCGGATCTGGCTCCCCTCAGCCTG CGCCTTGATGCTGTCACAGGCCTGCCCACCTTCTCTGCCCCGGACTCACACTCATACACA CACAGGCTCGCGCACGCTAGATGGAAGGAAGGCGTAGCTTCCTCCGCGTGACCTTCTCTT TAGATACTGTACAGCCAGCTCCTCAGAATAAAAGTTTCATTTTTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 509-629, - strand, RNAz p=0.947851 | |
| 516-613, + strand, RNAz p=0.53083 | |
| 945-1104, - strand, RNAz p=0.994476 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 509-629, - strand, RNAz p=0.947851 | |
| 516-613, + strand, RNAz p=0.53083 | |
| 945-1104, - strand, RNAz p=0.994476 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 72-254, gnl|bosTau2|chr25 (33190986-33190804) | |
| 72-254, gnl|canFam2|chr6 (12492679-12492457) | |
| 72-254, gnl|danRer3|chr5 (56193797-56194013) | |
| 72-254, gnl|dasNov1|scaffold_95728 (621-841) | |
| 72-254, gnl|echTel1|scaffold_269589 (2864-2691) | |
| 72-254, gnl|fr1|chrUn (176714401-176714613) | |
| 72-254, gnl|hg17|chr7 (99353408-99353630) | |
| 72-254, gnl|Hg17|chr7 (99353595-99353413) | |
| 72-254, gnl|mm7|chr5 (137127428-137127650) | |
| 72-254, gnl|Mm7|chr5 (137127615-137127433) | |
| 72-254, gnl|monDom2|scaffold_66 (1992277-1992477) | |
| 72-254, gnl|oryCun1|scaffold_193147 (16286-16448) | |
| 72-254, gnl|panTro1|chr6 (101136677-101136899) | |
| 72-254, gnl|rheMac2|chr3 (47390225-47390447) | |
| 72-254, gnl|rn3|chr12 (17613670-17613893) | |
| 72-254, gnl|tetNig1|chr7 (4967409-4967219) | |
| 72-254, gnl|xenTro1|scaffold_681 (413303-413104) | |
| 450-629, gnl|bosTau2|chr25 (33189483-33189304) | |
| 450-629, gnl|canFam2|chr6 (12494124-12493940) | |
| 450-629, gnl|danRer3|chr5 (56182819-56183010) | |
| 450-629, gnl|dasNov1|scaffold_28318 (10219-10410) | |
| 450-629, gnl|echTel1|scaffold_294936 (50044-50228) | |
| 450-629, gnl|fr1|chrUn (176713751-176713932) | |
| 450-629, gnl|hg17|chr7 (99350637-99350822) | |
| 450-629, gnl|Hg17|chr7 (99350841-99350641) | |
| 450-629, gnl|loxAfr1|scaffold_132954 (921-1105) | |
| 450-629, gnl|mm7|chr5 (137125301-137125485) | |
| 450-629, gnl|Mm7|chr5 (137125484-137125305) | |
| 450-629, gnl|monDom2|scaffold_66 (1990542-1990726) | |
| 450-629, gnl|panTro1|chr6 (101133823-101134007) | |
| 450-629, gnl|rheMac2|chr3 (47387473-47387657) | |
| 450-629, gnl|rn3|chr12 (17611527-17611711) | |
| 450-629, gnl|tetNig1|chr7 (4968087-4967909) | |
| 450-629, gnl|xenTro1|scaffold_681 (416342-416158) | |
| 825-1366, gnl|bosTau2|chr25 (33188769-33188234) | |
| 825-1366, gnl|Hg17|chr7 (99349900-99349351) | |
| 825-1366, gnl|Mm7|chr5 (137124675-137124145) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-254, gnl|bosTau2|chr25 (33190986-33190804) | |
| 72-254, gnl|canFam2|chr6 (12492679-12492457) | |
| 72-254, gnl|danRer3|chr5 (56193797-56194013) | |
| 72-254, gnl|dasNov1|scaffold_95728 (621-841) | |
| 72-254, gnl|echTel1|scaffold_269589 (2864-2691) | |
| 72-254, gnl|fr1|chrUn (176714401-176714613) | |
| 72-254, gnl|hg17|chr7 (99353408-99353630) | |
| 72-254, gnl|Hg17|chr7 (99353595-99353413) | |
| 72-254, gnl|mm7|chr5 (137127428-137127650) | |
| 72-254, gnl|Mm7|chr5 (137127615-137127433) | |
| 72-254, gnl|monDom2|scaffold_66 (1992277-1992477) | |
| 72-254, gnl|oryCun1|scaffold_193147 (16286-16448) | |
| 72-254, gnl|panTro1|chr6 (101136677-101136899) | |
| 72-254, gnl|rheMac2|chr3 (47390225-47390447) | |
| 72-254, gnl|rn3|chr12 (17613670-17613893) | |
| 72-254, gnl|tetNig1|chr7 (4967409-4967219) | |
| 72-254, gnl|xenTro1|scaffold_681 (413303-413104) | |
| 450-629, gnl|bosTau2|chr25 (33189483-33189304) | |
| 450-629, gnl|canFam2|chr6 (12494124-12493940) | |
| 450-629, gnl|danRer3|chr5 (56182819-56183010) | |
| 450-629, gnl|dasNov1|scaffold_28318 (10219-10410) | |
| 450-629, gnl|echTel1|scaffold_294936 (50044-50228) | |
| 450-629, gnl|fr1|chrUn (176713751-176713932) | |
| 450-629, gnl|hg17|chr7 (99350637-99350822) | |
| 450-629, gnl|Hg17|chr7 (99350841-99350641) | |
| 450-629, gnl|loxAfr1|scaffold_132954 (921-1105) | |
| 450-629, gnl|mm7|chr5 (137125301-137125485) | |
| 450-629, gnl|Mm7|chr5 (137125484-137125305) | |
| 450-629, gnl|monDom2|scaffold_66 (1990542-1990726) | |
| 450-629, gnl|panTro1|chr6 (101133823-101134007) | |
| 450-629, gnl|rheMac2|chr3 (47387473-47387657) | |
| 450-629, gnl|rn3|chr12 (17611527-17611711) | |
| 450-629, gnl|tetNig1|chr7 (4968087-4967909) | |
| 450-629, gnl|xenTro1|scaffold_681 (416342-416158) | |
| 825-1366, gnl|bosTau2|chr25 (33188769-33188234) | |
| 825-1366, gnl|Hg17|chr7 (99349900-99349351) | |
| 825-1366, gnl|Mm7|chr5 (137124675-137124145) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ecc (0.115035) |