Non-Coding RNA Search

Ss1.1-Pig1-48L19.5

Sequence:


               
               GTTACGGACCCTGCAGTGTACTCTCGCCATGTTCTTGTCCGCGGTCACCTTTGCCAAGAG
CAAGTCAAAAACAATTCTGGTGAAAATGATGAGCCAAGCTGGAACAGGTTTTTCCTTCAA
CACTAAGAGAAGCCGACTGCGGGAGAAACTGACTCTGTTGCATTATGATCCAGTTGCTAA
GAACAAGGCCTGTTAGACTTGCTGCTGGCCAAGATGGAGCAATGCGACCGAACTGACCCT
CCCACTTGAAACAACAACAACAACAACAACAAAAGGACAAAATAGGCAACAAAAGTCAGT
GATCCCTGTGAGGAAAGAGACAAACTAATGCTTGTGGATAACCACACAAAATGGAAAATT
CTGTCTTCTTTGCTTACGTATAAAGTCTTCATGTCTTCACATATCACGAATGCAAGCACC
TGTACTCTCCAGGCAATCAACCCAATTTTGTAGATGAGGAATCTGGTGCCAAGGACCTTA
AGGGCAGAGAACTAAAATATATGACAAGATGACAATTGGTACTCAGGACCGTCTTACTCC
AAAAGCCTAGGTCCTGAAGCACTCTACGAATGGACCTGTTATTGAGAGAGTTCACAGGAG
GCTAAAACCGCTTACCTGTATATGACCTCGGGTTGGGCAGTAGTGCGAATCTGGCTGACA
GCTACGTTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACGGACCCTGCAGTGTACTCTCGCCATGTTCTTGTCCGCGGTCACCTTTGCCAAGAG
CAAGTCAAAAACAATTCTGGTGAAAATGATGAGCCAAGCTGGAACAGGTTTTTCCTTCAA
CACTAAGAGAAGCCGACTGCGGGAGAAACTGACTCTGTTGCATTATGATCCAGTTGCTAA
GAACAAGGCCTGTTAGACTTGCTGCTGGCCAAGATGGAGCAATGCGACCGAACTGACCCT
CCCACTTGAAACAACAACAACAACAACAACAAAAGGACAAAATAGGCAACAAAAGTCAGT
GATCCCTGTGAGGAAAGAGACAAACTAATGCTTGTGGATAACCACACAAAATGGAAAATT
CTGTCTTCTTTGCTTACGTATAAAGTCTTCATGTCTTCACATATCACGAATGCAAGCACC
TGTACTCTCCAGGCAATCAACCCAATTTTGTAGATGAGGAATCTGGTGCCAAGGACCTTA
AGGGCAGAGAACTAAAATATATGACAAGATGACAATTGGTACTCAGGACCGTCTTACTCC
AAAAGCCTAGGTCCTGAAGCACTCTACGAATGGACCTGTTATTGAGAGAGTTCACAGGAG
GCTAAAACCGCTTACCTGTATATGACCTCGGGTTGGGCAGTAGTGCGAATCTGGCTGACA
GCTACGTTAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62702278|gb|AAX93204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62702278|gb|AAX93204.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               296-411, - strand, RNAz p=0.781751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-411, - strand, RNAz p=0.781751

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               177-672, gnl|bosTau2|chr11 (52235878-52236362)
               


               
               430-668, gnl|bosTau2|chr10 (42566618-42566378)
               

               
               430-668, gnl|Hg17|chr15 (46564677-46564916)
               

               
               430-668, gnl|Mm7|chr2 (125101859-125102090)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-672, gnl|bosTau2|chr11 (52235878-52236362)
               


               
               430-668, gnl|bosTau2|chr10 (42566618-42566378)
               

               
               430-668, gnl|Hg17|chr15 (46564677-46564916)
               

               
               430-668, gnl|Mm7|chr2 (125101859-125102090)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               eje (0.0988338)

	177-672, gnl\|bosTau2\|chr11 (52235878-52236362)

	430-668, gnl\|bosTau2\|chr10 (42566618-42566378)
	430-668, gnl\|Hg17\|chr15 (46564677-46564916)
	430-668, gnl\|Mm7\|chr2 (125101859-125102090)