Ss1.1-Pig1-49H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAATGCTAGCTACATATGCAGCTATTGATCCTAGAGTGCAGTACTTGGGATATACTA TGAAAGTGTTTGCTAAGCGATGTGACATTGGAGATGCTTCCAGAGGTAGTTTGTCTTCAT ATGCTTATATCCTTATGGTGCTGTACTTTCTGCAGCAGAGAAAACCACCTGTTATCCCAG TTCTACAAGAGATCTTTGATGGAAAACAGATTCCACAGAGAATGGTTGATGGATGGAATG CTTTTTTCTTTGATAAAACGGAAGAACTGAAAAAACGTTTACCTTCACTTGGAAAGAACA CAGAAACATTAGGAGAGCTTTGGTTGGGACTGCTTCGCTTCTATACTGAAGAGTTTGATT TCAAAGAGTATGTAATTAGCATTCGGCAGAAAAAACTGTTGACAACTTTTGAGAAGCAGT GGACTTCCAAATGTATTGCGATTGAAGATCCTTTTGATTTGAATCATAACCTTGGTGCTG GAGTTTCTAGAAAGATGACCAATTTCATCATGAAAGCATTTATCAATGGAAGGAAACTTT TTGGTACCCCCTTTTATCCACTCATTGGCAGAGAAGCTGAATACTTCTTTGATTCCAGAG TACTAACAGATGGAGAACTGGCTCCCAATGATCGATGTTGCCGTGTGTGTGGAAAAATCG GTCACTACATGAAAGACTGCCCTAAAAGGAGAAGGTTGGCAAATGATTGTGTATCAATAT TACAGGGAAAATAAACATGAGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAATGCTAGCTACATATGCAGCTATTGATCCTAGAGTGCAGTACTTGGGATATACTA TGAAAGTGTTTGCTAAGCGATGTGACATTGGAGATGCTTCCAGAGGTAGTTTGTCTTCAT ATGCTTATATCCTTATGGTGCTGTACTTTCTGCAGCAGAGAAAACCACCTGTTATCCCAG TTCTACAAGAGATCTTTGATGGAAAACAGATTCCACAGAGAATGGTTGATGGATGGAATG CTTTTTTCTTTGATAAAACGGAAGAACTGAAAAAACGTTTACCTTCACTTGGAAAGAACA CAGAAACATTAGGAGAGCTTTGGTTGGGACTGCTTCGCTTCTATACTGAAGAGTTTGATT TCAAAGAGTATGTAATTAGCATTCGGCAGAAAAAACTGTTGACAACTTTTGAGAAGCAGT GGACTTCCAAATGTATTGCGATTGAAGATCCTTTTGATTTGAATCATAACCTTGGTGCTG GAGTTTCTAGAAAGATGACCAATTTCATCATGAAAGCATTTATCAATGGAAGGAAACTTT TTGGTACCCCCTTTTATCCACTCATTGGCAGAGAAGCTGAATACTTCTTTGATTCCAGAG TACTAACAGATGGAGAACTGGCTCCCAATGATCGATGTTGCCGTGTGTGTGGAAAAATCG GTCACTACATGAAAGACTGCCCTAAAAGGAGAAGGTTGGCAAATGATTGTGTATCAATAT TACAGGGAAAATAAACATGAGGCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 329-447, + strand, RNAz p=0.585127 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 329-447, + strand, RNAz p=0.585127 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 67-191, gnl|bosTau2|chr3 (62989632-62989756) | |
| 67-191, gnl|canFam2|chr15 (11930891-11930723) | |
| 67-191, gnl|danRer3|chr22 (31585018-31584871) | |
| 67-191, gnl|dasNov1|scaffold_149239 (2977-3142) | |
| 67-191, gnl|echTel1|scaffold_202437 (8346-8178) | |
| 67-191, gnl|fr1|chrUn (244829758-244829889) | |
| 67-191, gnl|galGal2|chr8 (24655619-24655779) | |
| 67-191, gnl|hg17|chr1 (52636007-52636171) | |
| 67-191, gnl|Hg17|chr1 (52636152-52636029) | |
| 67-191, gnl|loxAfr1|scaffold_2538 (44323-44151) | |
| 67-191, gnl|mm7|chr4 (107907411-107907248) | |
| 67-191, gnl|Mm7|chr4 (107907265-107907388) | |
| 67-191, gnl|monDom2|scaffold_70 (1265345-1265201) | |
| 67-191, gnl|oryCun1|scaffold_158373 (23952-24114) | |
| 67-191, gnl|panTro1|chr1 (50860985-50861149) | |
| 67-191, gnl|rheMac2|chr1 (55292888-55293052) | |
| 67-191, gnl|rn3|chr5 (129807459-129807295) | |
| 67-191, gnl|tetNig1|chr12 (5645401-5645558) | |
| 67-191, gnl|xenTro1|scaffold_197 (267264-267413) | |
| 269-447, gnl|bosTau2|chr3 (62994996-62995174) | |
| 269-447, gnl|canFam2|chr15 (11935844-11935676) | |
| 269-447, gnl|danRer3|chr22 (31588799-31588631) | |
| 269-447, gnl|dasNov1|scaffold_3337 (6563-6399) | |
| 269-447, gnl|echTel1|scaffold_253264 (6262-6430) | |
| 269-447, gnl|fr1|chrUn (244829329-244829487) | |
| 269-447, gnl|galGal2|chr8 (24654077-24654244) | |
| 269-447, gnl|hg17|chr1 (52623947-52624115) | |
| 269-447, gnl|Hg17|chr1 (52624136-52623958) | |
| 269-447, gnl|loxAfr1|scaffold_43730 (1790-1949) | |
| 269-447, gnl|mm7|chr4 (107918895-107918727) | |
| 269-447, gnl|Mm7|chr4 (107918704-107918882) | |
| 269-447, gnl|monDom2|scaffold_70 (1268636-1268475) | |
| 269-447, gnl|oryCun1|scaffold_158373 (15914-16080) | |
| 269-447, gnl|panTro1|chr1 (50848894-50849062) | |
| 269-447, gnl|rheMac2|chr1 (55279553-55279722) | |
| 269-447, gnl|rn3|chr17 (10791268-10791100) | |
| 269-447, gnl|tetNig1|chr12 (5644889-5645045) | |
| 269-447, gnl|xenTro1|scaffold_197 (263912-264071) | |
| 579-744, gnl|bosTau2|chr3 (63009210-63009375) | |
| 579-744, gnl|Hg17|chr1 (52616028-52615863) | |
| 579-744, gnl|Mm7|chr4 (107924494-107924659) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-191, gnl|bosTau2|chr3 (62989632-62989756) | |
| 67-191, gnl|canFam2|chr15 (11930891-11930723) | |
| 67-191, gnl|danRer3|chr22 (31585018-31584871) | |
| 67-191, gnl|dasNov1|scaffold_149239 (2977-3142) | |
| 67-191, gnl|echTel1|scaffold_202437 (8346-8178) | |
| 67-191, gnl|fr1|chrUn (244829758-244829889) | |
| 67-191, gnl|galGal2|chr8 (24655619-24655779) | |
| 67-191, gnl|hg17|chr1 (52636007-52636171) | |
| 67-191, gnl|Hg17|chr1 (52636152-52636029) | |
| 67-191, gnl|loxAfr1|scaffold_2538 (44323-44151) | |
| 67-191, gnl|mm7|chr4 (107907411-107907248) | |
| 67-191, gnl|Mm7|chr4 (107907265-107907388) | |
| 67-191, gnl|monDom2|scaffold_70 (1265345-1265201) | |
| 67-191, gnl|oryCun1|scaffold_158373 (23952-24114) | |
| 67-191, gnl|panTro1|chr1 (50860985-50861149) | |
| 67-191, gnl|rheMac2|chr1 (55292888-55293052) | |
| 67-191, gnl|rn3|chr5 (129807459-129807295) | |
| 67-191, gnl|tetNig1|chr12 (5645401-5645558) | |
| 67-191, gnl|xenTro1|scaffold_197 (267264-267413) | |
| 269-447, gnl|bosTau2|chr3 (62994996-62995174) | |
| 269-447, gnl|canFam2|chr15 (11935844-11935676) | |
| 269-447, gnl|danRer3|chr22 (31588799-31588631) | |
| 269-447, gnl|dasNov1|scaffold_3337 (6563-6399) | |
| 269-447, gnl|echTel1|scaffold_253264 (6262-6430) | |
| 269-447, gnl|fr1|chrUn (244829329-244829487) | |
| 269-447, gnl|galGal2|chr8 (24654077-24654244) | |
| 269-447, gnl|hg17|chr1 (52623947-52624115) | |
| 269-447, gnl|Hg17|chr1 (52624136-52623958) | |
| 269-447, gnl|loxAfr1|scaffold_43730 (1790-1949) | |
| 269-447, gnl|mm7|chr4 (107918895-107918727) | |
| 269-447, gnl|Mm7|chr4 (107918704-107918882) | |
| 269-447, gnl|monDom2|scaffold_70 (1268636-1268475) | |
| 269-447, gnl|oryCun1|scaffold_158373 (15914-16080) | |
| 269-447, gnl|panTro1|chr1 (50848894-50849062) | |
| 269-447, gnl|rheMac2|chr1 (55279553-55279722) | |
| 269-447, gnl|rn3|chr17 (10791268-10791100) | |
| 269-447, gnl|tetNig1|chr12 (5644889-5645045) | |
| 269-447, gnl|xenTro1|scaffold_197 (263912-264071) | |
| 579-744, gnl|bosTau2|chr3 (63009210-63009375) | |
| 579-744, gnl|Hg17|chr1 (52616028-52615863) | |
| 579-744, gnl|Mm7|chr4 (107924494-107924659) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |