Non-Coding RNA Search

Ss1.1-Pig1-49I18.5

Sequence:


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCTTCTCTTCCTTCCCCAGTACT
GAGTGTCTTCACAGATGTCTCTCCTGCTCAGAGAGAATTTCTCCTCCATTTAGTTAAGAG
TTGATTCCGTTTAGGGTTGTGTGCTGGCAGTGCGTGCTGGGCTCACTGGTTTTACACCGC
TTCCGTTCCTGCACTTTGGTCATGTCTTTGTTCGGTTCTTAGAAATCGCAGCTCCCATTG
AGCTGCATGTGGTCCAGGCACTGTGTGTGTGACGTTACAGGACGTGGTCTGGTCATAACA
ATCATCTTTCCTAGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCATAA
AAAGGAGCCACAAGTACCTTAAGAATGCAAAACTTTTCATACCAGGTGATACGATTCAAA
AACCCCCTTACCTGCAAGTGCTGATACGAAGTGCAGAAGCCACAGTCAAACAAAACAAAC
ACATCAAAATGAAAAAACTTTCGGAAATTGATTTTTTTAGCTGTTATTTTTGTTTGGTTG
GTTTTTGCTTGGTTTTGTTTAAATGGGCAAGAAATAGACATGTGGCTGGAGTAAAACCTA
ATCAAACTAGAAGACAAAAATCTAACATAGTTTTTATGGACCAAGGAACTTGTATAAGCT
TTAGCAAAAGGTACATTTTCACCAAACCTTTTTTATATCACAGTATATAGTACACCTTTG
TTACCAAATAGGTGGTTCTCCTCCCCACCCCGTTTGAGCTTTGGCTCCCAAGTCCATTCA
GGTTCCAGGCCTGGCCATGCTTGTTTAATCTAACCACCACCATACTCTTCCAGGTCTTTT
TGGTCTAAGGCTGGAACTGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCTTCTCTTCCTTCCCCAGTACT
GAGTGTCTTCACAGATGTCTCTCCTGCTCAGAGAGAATTTCTCCTCCATTTAGTTAAGAG
TTGATTCCGTTTAGGGTTGTGTGCTGGCAGTGCGTGCTGGGCTCACTGGTTTTACACCGC
TTCCGTTCCTGCACTTTGGTCATGTCTTTGTTCGGTTCTTAGAAATCGCAGCTCCCATTG
AGCTGCATGTGGTCCAGGCACTGTGTGTGTGACGTTACAGGACGTGGTCTGGTCATAACA
ATCATCTTTCCTAGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCATAA
AAAGGAGCCACAAGTACCTTAAGAATGCAAAACTTTTCATACCAGGTGATACGATTCAAA
AACCCCCTTACCTGCAAGTGCTGATACGAAGTGCAGAAGCCACAGTCAAACAAAACAAAC
ACATCAAAATGAAAAAACTTTCGGAAATTGATTTTTTTAGCTGTTATTTTTGTTTGGTTG
GTTTTTGCTTGGTTTTGTTTAAATGGGCAAGAAATAGACATGTGGCTGGAGTAAAACCTA
ATCAAACTAGAAGACAAAAATCTAACATAGTTTTTATGGACCAAGGAACTTGTATAAGCT
TTAGCAAAAGGTACATTTTCACCAAACCTTTTTTATATCACAGTATATAGTACACCTTTG
TTACCAAATAGGTGGTTCTCCTCCCCACCCCGTTTGAGCTTTGGCTCCCAAGTCCATTCA
GGTTCCAGGCCTGGCCATGCTTGTTTAATCTAACCACCACCATACTCTTCCAGGTCTTTT
TGGTCTAAGGCTGGAACTGTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               40-394, gnl|bosTau2|chr21 (45840689-45841040)
               

               
               40-394, gnl|Hg17|chr4 (26110302-26110665)
               

               
               40-394, gnl|Mm7|chr6 (46569251-46568922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-394, gnl|bosTau2|chr21 (45840689-45841040)
               

               
               40-394, gnl|Hg17|chr4 (26110302-26110665)
               

               
               40-394, gnl|Mm7|chr6 (46569251-46568922)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               eru (0.120048)

	40-394, gnl\|bosTau2\|chr21 (45840689-45841040)
	40-394, gnl\|Hg17\|chr4 (26110302-26110665)
	40-394, gnl\|Mm7\|chr6 (46569251-46568922)