Non-Coding RNA Search

Ss1.1-Pig1-49J07.5

Sequence:


               
               GAATCACTGGCATTGGATGGGGAGAACCAGAAGCCCAGGCTTCGGACCCCTACCTGAGCC
CTGGGAGATCATCCGCTTGGAGGAGAATGGTCTCCTTACAGGCTCACACCCAGTTGGCTT
GGGTCTCTGTCTCTGGCCAGGGTCTGGCAGGACCACCACTGTCTCGGGTGTGGCTTTGTC
AGAGGGAGAACCGTCCTGAGGGTCTTTAATCATGTTTGGATGTTATGTGTTAGCTCCGAG
AGTAGATGCCGGCAGCTGTCAGCCAGGCCCATTGCTCAGGCCTTCACTCTGAGGATTAGA
CTGGCCGATCAGAGGGCCATGTTTCTGGGCCACTCCTCCCGAGGGAGGTCGAAGGGCTTT
AACCCCAGCCGAGGGGGAGGTCCGAGGTGTCCTCAGCACCCTCCTGGGCAGGAATTCTGT
CTTTTCTCTCACACATCTGGGTTTGTGGGGTGGGTAGGCAGGCTGGGCACGAGAAGCTCC
GTATGGCCCCCACACAGGGCAGGCCCTCCCCTCCCAGAGTATTCCATTGGCCGGAGGCCA
GCAGCTTCAAGGAGGGATATTGAAGTAGGACTCCTTCGTCCTCTCACTGGCTTTGGGTCC
CTCAATAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCACTGGCATTGGATGGGGAGAACCAGAAGCCCAGGCTTCGGACCCCTACCTGAGCC
CTGGGAGATCATCCGCTTGGAGGAGAATGGTCTCCTTACAGGCTCACACCCAGTTGGCTT
GGGTCTCTGTCTCTGGCCAGGGTCTGGCAGGACCACCACTGTCTCGGGTGTGGCTTTGTC
AGAGGGAGAACCGTCCTGAGGGTCTTTAATCATGTTTGGATGTTATGTGTTAGCTCCGAG
AGTAGATGCCGGCAGCTGTCAGCCAGGCCCATTGCTCAGGCCTTCACTCTGAGGATTAGA
CTGGCCGATCAGAGGGCCATGTTTCTGGGCCACTCCTCCCGAGGGAGGTCGAAGGGCTTT
AACCCCAGCCGAGGGGGAGGTCCGAGGTGTCCTCAGCACCCTCCTGGGCAGGAATTCTGT
CTTTTCTCTCACACATCTGGGTTTGTGGGGTGGGTAGGCAGGCTGGGCACGAGAAGCTCC
GTATGGCCCCCACACAGGGCAGGCCCTCCCCTCCCAGAGTATTCCATTGGCCGGAGGCCA
GCAGCTTCAAGGAGGGATATTGAAGTAGGACTCCTTCGTCCTCTCACTGGCTTTGGGTCC
CTCAATAAACTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-94, + strand, RNAz p=0.755756
               

               
               271-372, - strand, RNAz p=0.522172
               

               
               434-549, - strand, RNAz p=0.536062

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, + strand, RNAz p=0.755756
               

               
               271-372, - strand, RNAz p=0.522172
               

               
               434-549, - strand, RNAz p=0.536062

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               331-427, + strand, RNAmicro p=0.983099

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               331-427, + strand, RNAmicro p=0.983099

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_025230, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_025230, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-611, gnl|bosTau2|chr10 (12380370-12379761)
               

               
               1-611, gnl|canFam2|chr8 (7129426-7129916)
               

               
               1-611, gnl|dasNov1|scaffold_37422 (5118-5610)
               

               
               1-611, gnl|echTel1|scaffold_275767 (6512-5984)
               

               
               1-611, gnl|hg17|chr14 (23662437-23662930)
               

               
               1-611, gnl|Hg17|chr14 (23662446-23663065)
               

               
               1-611, gnl|loxAfr1|scaffold_146679 (4235-4769)
               

               
               1-611, gnl|mm7|chr14 (50436729-50437217)
               

               
               1-611, gnl|Mm7|chr14 (50436738-50437332)
               

               
               1-611, gnl|monDom2|scaffold_12 (25644954-25644409)
               

               
               1-611, gnl|panTro1|chr15 (22562696-22563189)
               

               
               1-611, gnl|rheMac2|chr7 (87016913-87017410)
               

               
               1-611, gnl|rn3|chr15 (33716422-33716896)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr10 (12380370-12379761)
               

               
               1-611, gnl|canFam2|chr8 (7129426-7129916)
               

               
               1-611, gnl|dasNov1|scaffold_37422 (5118-5610)
               

               
               1-611, gnl|echTel1|scaffold_275767 (6512-5984)
               

               
               1-611, gnl|hg17|chr14 (23662437-23662930)
               

               
               1-611, gnl|Hg17|chr14 (23662446-23663065)
               

               
               1-611, gnl|loxAfr1|scaffold_146679 (4235-4769)
               

               
               1-611, gnl|mm7|chr14 (50436729-50437217)
               

               
               1-611, gnl|Mm7|chr14 (50436738-50437332)
               

               
               1-611, gnl|monDom2|scaffold_12 (25644954-25644409)
               

               
               1-611, gnl|panTro1|chr15 (22562696-22563189)
               

               
               1-611, gnl|rheMac2|chr7 (87016913-87017410)
               

               
               1-611, gnl|rn3|chr15 (33716422-33716896)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.350693)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)

	1-94, + strand, RNAz p=0.755756
	271-372, - strand, RNAz p=0.522172
	434-549, - strand, RNAz p=0.536062

	1-611, gnl\|bosTau2\|chr10 (12380370-12379761)
	1-611, gnl\|canFam2\|chr8 (7129426-7129916)
	1-611, gnl\|dasNov1\|scaffold_37422 (5118-5610)
	1-611, gnl\|echTel1\|scaffold_275767 (6512-5984)
	1-611, gnl\|hg17\|chr14 (23662437-23662930)
	1-611, gnl\|Hg17\|chr14 (23662446-23663065)
	1-611, gnl\|loxAfr1\|scaffold_146679 (4235-4769)
	1-611, gnl\|mm7\|chr14 (50436729-50437217)
	1-611, gnl\|Mm7\|chr14 (50436738-50437332)
	1-611, gnl\|monDom2\|scaffold_12 (25644954-25644409)
	1-611, gnl\|panTro1\|chr15 (22562696-22563189)
	1-611, gnl\|rheMac2\|chr7 (87016913-87017410)
	1-611, gnl\|rn3\|chr15 (33716422-33716896)