Non-Coding RNA Search

Ss1.1-Pig1-4J06.5

Sequence:


               
               TTCCTCAGAATGTAAAGAGAAACACAAGAAAAAGAAGAAGAAAGAGAAGCATAAGAAAAA
GAAGAAGGAAAAGAAAAAGAAGAAAAAACGAAAGCACAAGTCTTCCAAGTCAAACGAGAG
TTCAGACTCAGAATGACAAGAAGTTGACTGACTTGGTCGGCATTCTCTTCTGCAAAATCA
AACACTGTGGCCAAAGATGCGAGGACTGCGGAGTCCGAGAGGAACAGGAGGGACACCAAG
AGAGGAAGAGCGCTGGTGGCACCGGTGCGGATTCTCAGCCACCTTCCAGGAGAGCTGTGA
GCCACAGGAGAGGGAGCGTGTCTTGCCAGGTGCCAGCTCTGGAGAGCAGCTGATGCCGGG
CTGGAAAGCTCTTCTCATTGTCCTCCTCCCTGCTGATCACTGTGGTCTGTGATTGCTTAG
AAATGCCTCTGGCGGGGTGGCCAGACCAAGGGACTCCCCGAGGAAGCTCCTCCAGGTGCT
GCGCTGCTTCCACCCTCCACGGTGGGCACTTAACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCAGAATGTAAAGAGAAACACAAGAAAAAGAAGAAGAAAGAGAAGCATAAGAAAAA
GAAGAAGGAAAAGAAAAAGAAGAAAAAACGAAAGCACAAGTCTTCCAAGTCAAACGAGAG
TTCAGACTCAGAATGACAAGAAGTTGACTGACTTGGTCGGCATTCTCTTCTGCAAAATCA
AACACTGTGGCCAAAGATGCGAGGACTGCGGAGTCCGAGAGGAACAGGAGGGACACCAAG
AGAGGAAGAGCGCTGGTGGCACCGGTGCGGATTCTCAGCCACCTTCCAGGAGAGCTGTGA
GCCACAGGAGAGGGAGCGTGTCTTGCCAGGTGCCAGCTCTGGAGAGCAGCTGATGCCGGG
CTGGAAAGCTCTTCTCATTGTCCTCCTCCCTGCTGATCACTGTGGTCTGTGATTGCTTAG
AAATGCCTCTGGCGGGGTGGCCAGACCAAGGGACTCCCCGAGGAAGCTCCTCCAGGTGCT
GCGCTGCTTCCACCCTCCACGGTGGGCACTTAACGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-385, - strand, RNAz p=0.522471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-385, - strand, RNAz p=0.522471

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_203288, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_203288, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-505, gnl|bosTau2|chr4 (34597622-34597136)
               

               
               1-505, gnl|canFam2|chr14 (48128333-48128792)
               

               
               1-505, gnl|dasNov1|scaffold_77745 (1127-1568)
               

               
               1-505, gnl|echTel1|scaffold_277788 (41043-41478)
               

               
               1-505, gnl|hg17|chr7 (32907635-32908086)
               

               
               1-505, gnl|Hg17|chr7 (32908221-32907726)
               

               
               1-505, gnl|mm7|chr9 (22327115-22327469)
               

               
               1-505, gnl|monDom2|scaffold_2 (125914815-125914363)
               

               
               1-505, gnl|oryCun1|scaffold_113001 (4862-4414)
               

               
               1-505, gnl|panTro1|chr6 (34020599-34021040)
               

               
               1-505, gnl|rheMac2|chr3 (93069107-93068655)
               

               
               1-505, gnl|rn3|chr8 (21783986-21784343)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr4 (34597622-34597136)
               

               
               1-505, gnl|canFam2|chr14 (48128333-48128792)
               

               
               1-505, gnl|dasNov1|scaffold_77745 (1127-1568)
               

               
               1-505, gnl|echTel1|scaffold_277788 (41043-41478)
               

               
               1-505, gnl|hg17|chr7 (32907635-32908086)
               

               
               1-505, gnl|Hg17|chr7 (32908221-32907726)
               

               
               1-505, gnl|mm7|chr9 (22327115-22327469)
               

               
               1-505, gnl|monDom2|scaffold_2 (125914815-125914363)
               

               
               1-505, gnl|oryCun1|scaffold_113001 (4862-4414)
               

               
               1-505, gnl|panTro1|chr6 (34020599-34021040)
               

               
               1-505, gnl|rheMac2|chr3 (93069107-93068655)
               

               
               1-505, gnl|rn3|chr8 (21783986-21784343)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hlv (0.278513)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)

	1-505, gnl\|bosTau2\|chr4 (34597622-34597136)
	1-505, gnl\|canFam2\|chr14 (48128333-48128792)
	1-505, gnl\|dasNov1\|scaffold_77745 (1127-1568)
	1-505, gnl\|echTel1\|scaffold_277788 (41043-41478)
	1-505, gnl\|hg17\|chr7 (32907635-32908086)
	1-505, gnl\|Hg17\|chr7 (32908221-32907726)
	1-505, gnl\|mm7\|chr9 (22327115-22327469)
	1-505, gnl\|monDom2\|scaffold_2 (125914815-125914363)
	1-505, gnl\|oryCun1\|scaffold_113001 (4862-4414)
	1-505, gnl\|panTro1\|chr6 (34020599-34021040)
	1-505, gnl\|rheMac2\|chr3 (93069107-93068655)
	1-505, gnl\|rn3\|chr8 (21783986-21784343)

	hlv (0.278513)
	sin (0.174948)
	cje (0.165235)
	cst (0.140036)
	ste (0.135208)
	nbm (0.0993246)