Ss1.1-Pig1-50C01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCGATAGAGGAAGTAAAAGCTTTGTTTAAAAATGAAAACTGTCCCAAGGTGATAAGCTG CGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGACGCACAGCA GGCTTTTAAATACTTGAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAG GATAAAAGCCATTAATACTTTTTTTGCTAAAAATGGTTATCGCTTAATGGATTCTACTAT GTATAGTCAGCCCATTCAAACTCAAGCACAGTATGCCTCACCAGTCTTTATGCAGCCTGT ATATAATCCTCACCAACAGTACTCTGTTTATAGTATTGTGCCTCAGTCTTGGTCTCCAAA TCCTGCACCTTACTTTGAAACACCACTGGCTCCTTTTCCCAATGGTAGTTTTCTGAATGG CTTTAATTCACCGGGATCTTATAAAACAAGTGCTGCTGCTGCTGTGAACATGGGTCGACC ATTCCAAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCAGGTGGTTCAGAACATTCAAC AGAGGGCTCTGTGTCATTGGGGGATGGACCATTGAACAGATCTGGTTCAAGGAACTTTCC AAATGAACGACATAACCCCACAGTAACAGGGCATCAGGAGCAAAGCTACCTTCCAAAGGA GACTCCCACTTTGCAGACGGAGCAGAATGGGGACTATGGAAGGGGCAGGTAAGGAAATGC AGTAATAAATATGGAAATAAGGTATAGGAAAAAAATCTTTGATCATAATATGAATATTGG AAGACCATGATGTAGTGATTTTTTTTTTGCTTTAACTTAATTATTGGTATATTGTTATGC TAAATAAATGCTTTGTTCACATATTGTGGGTTTGTCATAATTATTAAGAAATCTGGAGTG CCCATGTAGAATATAGCTCTGACTCAGAGGTTTTAAAAAGTTATTCTGAAGTTCTTTACA GTTCACTAAGGAAAGATTGGCTTAGAAAGATAGAAGACCCAGTCTGCTTCATAGTTTTAA TTCCTAACAACTTATAAACTATGGGAATGGGATTATGTATTGCCTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCGATAGAGGAAGTAAAAGCTTTGTTTAAAAATGAAAACTGTCCCAAGGTGATAAGCTG CGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGACGCACAGCA GGCTTTTAAATACTTGAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAG GATAAAAGCCATTAATACTTTTTTTGCTAAAAATGGTTATCGCTTAATGGATTCTACTAT GTATAGTCAGCCCATTCAAACTCAAGCACAGTATGCCTCACCAGTCTTTATGCAGCCTGT ATATAATCCTCACCAACAGTACTCTGTTTATAGTATTGTGCCTCAGTCTTGGTCTCCAAA TCCTGCACCTTACTTTGAAACACCACTGGCTCCTTTTCCCAATGGTAGTTTTCTGAATGG CTTTAATTCACCGGGATCTTATAAAACAAGTGCTGCTGCTGCTGTGAACATGGGTCGACC ATTCCAAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCAGGTGGTTCAGAACATTCAAC AGAGGGCTCTGTGTCATTGGGGGATGGACCATTGAACAGATCTGGTTCAAGGAACTTTCC AAATGAACGACATAACCCCACAGTAACAGGGCATCAGGAGCAAAGCTACCTTCCAAAGGA GACTCCCACTTTGCAGACGGAGCAGAATGGGGACTATGGAAGGGGCAGGTAAGGAAATGC AGTAATAAATATGGAAATAAGGTATAGGAAAAAAATCTTTGATCATAATATGAATATTGG AAGACCATGATGTAGTGATTTTTTTTTTGCTTTAACTTAATTATTGGTATATTGTTATGC TAAATAAATGCTTTGTTCACATATTGTGGGTTTGTCATAATTATTAAGAAATCTGGAGTG CCCATGTAGAATATAGCTCTGACTCAGAGGTTTTAAAAAGTTATTCTGAAGTTCTTTACA GTTCACTAAGGAAAGATTGGCTTAGAAAGATAGAAGACCCAGTCTGCTTCATAGTTTTAA TTCCTAACAACTTATAAACTATGGGAATGGGATTATGTATTGCCTACC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 9-122, gnl|bosTau2|chr5 (22780026-22779913) | |
| 9-122, gnl|canFam2|chr27 (7295551-7295432) | |
| 9-122, gnl|canFam2|chr27 (7295551-7295444) | |
| 9-122, gnl|danRer3|chr6 (20694829-20694952) | |
| 9-122, gnl|danRer3|chr6 (20855635-20855527) | |
| 9-122, gnl|dasNov1|scaffold_101697 (4839-4735) | |
| 9-122, gnl|dasNov1|scaffold_11805 (39170-39289) | |
| 9-122, gnl|echTel1|scaffold_102989 (2194-2075) | |
| 9-122, gnl|echTel1|scaffold_102989 (2194-2087) | |
| 9-122, gnl|fr1|chrUn (41709473-41709354) | |
| 9-122, gnl|fr1|chrUn (41709473-41709365) | |
| 9-122, gnl|galGal2|chrUn (6298599-6298482) | |
| 9-122, gnl|galGal2|chrUn (6298599-6298492) | |
| 9-122, gnl|hg17|chr12 (49120488-49120607) | |
| 9-122, gnl|Hg17|chr12 (49120487-49120600) | |
| 9-122, gnl|hg17|chr15 (34697219-34697326) | |
| 9-122, gnl|loxAfr1|scaffold_117734 (3981-4100) | |
| 9-122, gnl|loxAfr1|scaffold_117734 (3981-4088) | |
| 9-122, gnl|mm7|chr15 (99978567-99978686) | |
| 9-122, gnl|Mm7|chr15 (99978566-99978679) | |
| 9-122, gnl|mm7|chrX (4175823-4175715) | |
| 9-122, gnl|monDom2|scaffold_194 (967607-967726) | |
| 9-122, gnl|oryCun1|scaffold_206379 (39139-39020) | |
| 9-122, gnl|oryCun1|scaffold_206379 (13176-13069) | |
| 9-122, gnl|panTro1|chr10 (50336535-50336654) | |
| 9-122, gnl|panTro1|chr16 (34501063-34501170) | |
| 9-122, gnl|rheMac2|chr11 (47586015-47586134) | |
| 9-122, gnl|rheMac2|chr7 (14943633-14943740) | |
| 9-122, gnl|rn3|chr18 (37533000-37532893) | |
| 9-122, gnl|rn3|chr18 (37533000-37532892) | |
| 9-122, gnl|tetNig1|chr9 (3257245-3257364) | |
| 9-122, gnl|tetNig1|chr9 (3257245-3257354) | |
| 9-122, gnl|xenTro1|scaffold_34 (477478-477597) | |
| 9-122, gnl|xenTro1|scaffold_34 (477478-477585) | |
| 175-389, gnl|bosTau2|chr5 (22768568-22768354) | |
| 175-389, gnl|Hg17|chr12 (49133509-49133723) | |
| 175-389, gnl|Mm7|chr15 (99981711-99981922) | |
| 495-1059, gnl|bosTau2|chr5 (22763718-22763174) | |
| 495-1059, gnl|Hg17|chr12 (49141184-49141724) | |
| 495-1059, gnl|Mm7|chr15 (99986080-99986790) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-122, gnl|bosTau2|chr5 (22780026-22779913) | |
| 9-122, gnl|canFam2|chr27 (7295551-7295432) | |
| 9-122, gnl|canFam2|chr27 (7295551-7295444) | |
| 9-122, gnl|danRer3|chr6 (20694829-20694952) | |
| 9-122, gnl|danRer3|chr6 (20855635-20855527) | |
| 9-122, gnl|dasNov1|scaffold_101697 (4839-4735) | |
| 9-122, gnl|dasNov1|scaffold_11805 (39170-39289) | |
| 9-122, gnl|echTel1|scaffold_102989 (2194-2075) | |
| 9-122, gnl|echTel1|scaffold_102989 (2194-2087) | |
| 9-122, gnl|fr1|chrUn (41709473-41709354) | |
| 9-122, gnl|fr1|chrUn (41709473-41709365) | |
| 9-122, gnl|galGal2|chrUn (6298599-6298482) | |
| 9-122, gnl|galGal2|chrUn (6298599-6298492) | |
| 9-122, gnl|hg17|chr12 (49120488-49120607) | |
| 9-122, gnl|Hg17|chr12 (49120487-49120600) | |
| 9-122, gnl|hg17|chr15 (34697219-34697326) | |
| 9-122, gnl|loxAfr1|scaffold_117734 (3981-4100) | |
| 9-122, gnl|loxAfr1|scaffold_117734 (3981-4088) | |
| 9-122, gnl|mm7|chr15 (99978567-99978686) | |
| 9-122, gnl|Mm7|chr15 (99978566-99978679) | |
| 9-122, gnl|mm7|chrX (4175823-4175715) | |
| 9-122, gnl|monDom2|scaffold_194 (967607-967726) | |
| 9-122, gnl|oryCun1|scaffold_206379 (39139-39020) | |
| 9-122, gnl|oryCun1|scaffold_206379 (13176-13069) | |
| 9-122, gnl|panTro1|chr10 (50336535-50336654) | |
| 9-122, gnl|panTro1|chr16 (34501063-34501170) | |
| 9-122, gnl|rheMac2|chr11 (47586015-47586134) | |
| 9-122, gnl|rheMac2|chr7 (14943633-14943740) | |
| 9-122, gnl|rn3|chr18 (37533000-37532893) | |
| 9-122, gnl|rn3|chr18 (37533000-37532892) | |
| 9-122, gnl|tetNig1|chr9 (3257245-3257364) | |
| 9-122, gnl|tetNig1|chr9 (3257245-3257354) | |
| 9-122, gnl|xenTro1|scaffold_34 (477478-477597) | |
| 9-122, gnl|xenTro1|scaffold_34 (477478-477585) | |
| 175-389, gnl|bosTau2|chr5 (22768568-22768354) | |
| 175-389, gnl|Hg17|chr12 (49133509-49133723) | |
| 175-389, gnl|Mm7|chr15 (99981711-99981922) | |
| 495-1059, gnl|bosTau2|chr5 (22763718-22763174) | |
| 495-1059, gnl|Hg17|chr12 (49141184-49141724) | |
| 495-1059, gnl|Mm7|chr15 (99986080-99986790) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| clu (0.119646) |