Non-Coding RNA Search

Ss1.1-Pig1-50L11.5

Sequence:


               
               GGTGGACAACAACACAGCATTGGTGGACAAACTGAAACGATTCCAACAGGAGAATGAAGA
GTTAAAAGCTCGGATGGACAAGCACATGGCAATTTCAAGGCAACTTTCCACAGAGCAGGC
TGTCCTGCAGGAGTCACTTGAGAAGGAATCCAAAGTCAACAAGCGGCTTTCCATGGAGAA
CGAGGAGCTGCTGTGGAAGCTGCACAACGGGGACCTGTGCAGCCCCAAGAGGTCTCCCAC
GTCCCCTGCCATCCCCTTCCAGTCCCCGAGGAACTCCGGCTCCTTCCCCAGCCCCAGCAT
CTCACCCAGATGACCCTCCTGGGAGTCGGGAGACAGACTGACCGCAGTTCTGCAGGGCTG
ACCCCACCCGCAGCCGCGGAGCCACCTTCACCCACACGCATCGCCCGCGGTAGAACTGGA
AAGTCACGGCCAGACCGGCGCCTTCTGAGAACCGAGACCGGAACTCTGGAGGGAGGCTTC
CAACCTGGTCCAGGAGACGCCTCCCCAAGAGATGCTGTCGGAATGGATCTCCACGGACCC
TGTTGCACAAAAGCACTTACAGAACGAGAAGATCTTGTTCATTGCCTTTTCCACCTACGG
GTAAAGGGGAAAACTCTCAGGGGCCTGTCAAGATTTATATAACCTTTGTAATGTTCTTCA
CCACAGACACCTTCTTATGATTTGTATTTTGGTCTGACTGGGGATGTGTGAATGAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGACAACAACACAGCATTGGTGGACAAACTGAAACGATTCCAACAGGAGAATGAAGA
GTTAAAAGCTCGGATGGACAAGCACATGGCAATTTCAAGGCAACTTTCCACAGAGCAGGC
TGTCCTGCAGGAGTCACTTGAGAAGGAATCCAAAGTCAACAAGCGGCTTTCCATGGAGAA
CGAGGAGCTGCTGTGGAAGCTGCACAACGGGGACCTGTGCAGCCCCAAGAGGTCTCCCAC
GTCCCCTGCCATCCCCTTCCAGTCCCCGAGGAACTCCGGCTCCTTCCCCAGCCCCAGCAT
CTCACCCAGATGACCCTCCTGGGAGTCGGGAGACAGACTGACCGCAGTTCTGCAGGGCTG
ACCCCACCCGCAGCCGCGGAGCCACCTTCACCCACACGCATCGCCCGCGGTAGAACTGGA
AAGTCACGGCCAGACCGGCGCCTTCTGAGAACCGAGACCGGAACTCTGGAGGGAGGCTTC
CAACCTGGTCCAGGAGACGCCTCCCCAAGAGATGCTGTCGGAATGGATCTCCACGGACCC
TGTTGCACAAAAGCACTTACAGAACGAGAAGATCTTGTTCATTGCCTTTTCCACCTACGG
GTAAAGGGGAAAACTCTCAGGGGCCTGTCAAGATTTATATAACCTTTGTAATGTTCTTCA
CCACAGACACCTTCTTATGATTTGTATTTTGGTCTGACTGGGGATGTGTGAATGAAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K0Q3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K0Q3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-363, - strand, RNAz p=0.758098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-363, - strand, RNAz p=0.758098

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               98-386, gnl|bosTau2|chr27 (11424880-11425168)
               

               
               98-386, gnl|Hg17|chr8 (17547930-17547608)
               

               
               98-386, gnl|Mm7|chr8 (39777323-39777047)
               


               
               397-651, gnl|bosTau2|chr27 (11425160-11425400)
               

               
               397-651, gnl|Hg17|chr8 (17547619-17547376)
               

               
               397-651, gnl|Mm7|chr8 (39776980-39776769)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-386, gnl|bosTau2|chr27 (11424880-11425168)
               

               
               98-386, gnl|Hg17|chr8 (17547930-17547608)
               

               
               98-386, gnl|Mm7|chr8 (39777323-39777047)
               


               
               397-651, gnl|bosTau2|chr27 (11425160-11425400)
               

               
               397-651, gnl|Hg17|chr8 (17547619-17547376)
               

               
               397-651, gnl|Mm7|chr8 (39776980-39776769)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	98-386, gnl\|bosTau2\|chr27 (11424880-11425168)
	98-386, gnl\|Hg17\|chr8 (17547930-17547608)
	98-386, gnl\|Mm7\|chr8 (39777323-39777047)

	397-651, gnl\|bosTau2\|chr27 (11425160-11425400)
	397-651, gnl\|Hg17\|chr8 (17547619-17547376)
	397-651, gnl\|Mm7\|chr8 (39776980-39776769)